Analysis of interatomic Contacts of Structural Units in PDB entry:
8V57


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V57 entry

There are 4 chains in PDB entry 8V57 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 0MET 215
B
 VAL 1MET 215
C
 GLY 6ALA 120
D
 PRO 7ALA 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8V57. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 43Right-handed alpha
Helix 2
AA2
A
49 57Right-handed alpha
Helix 3
AA3
A
61 65Right-handed 310
Helix 4
AA4
A
67 79Right-handed alpha
Helix 5
AA5
A
99 103Right-handed 310
Helix 6
AA6
A
117 128Right-handed alpha
Helix 7
AA7
A
139 144Right-handed alpha
Helix 8
AA8
A
202 206Right-handed 310
Helix 9
AA9
B
24 43Right-handed alpha
Helix 10
AB1
B
49 57Right-handed alpha
Helix 11
AB2
B
61 65Right-handed 310
Helix 12
AB3
B
67 79Right-handed alpha
Helix 13
AB4
B
99 101Right-handed 310
Helix 14
AB5
B
117 128Right-handed alpha
Helix 15
AB6
B
139 144Right-handed alpha
Helix 16
AB7
B
202 206Right-handed 310
Helix 17
AB8
C
22 37Right-handed alpha
Helix 18
AB9
D
20 37Right-handed alpha
Helix 19
AC1
D
88 93Right-handed alpha
Helix 20
AC2
D
105 108Right-handed 310
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There are 10 sheets in PDB entry 8V57. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
162 171anti-parallel
Strand 3
A
131 135anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
162 171anti-parallel
Strand 3
A
176 181anti-parallel
Strand 4
A
193 197anti-parallel
Strand 5
A
149 150parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
A
211 213anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
162 172anti-parallel
Strand 3
B
131 135anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
162 172anti-parallel
Strand 3
B
175 181anti-parallel
Strand 4
B
193 197anti-parallel
Strand 5
B
149 150parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
103 105anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
211 214anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 15first strand
Strand 2
C
42 56anti-parallel
Strand 3
C
60 74anti-parallel
Strand 4
C
94 104anti-parallel
Strand 5
C
109 119anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 15first strand
Strand 2
D
48 56anti-parallel
Strand 3
D
60 67anti-parallel
Strand 4
D
95 104anti-parallel
Strand 5
D
109 119anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 44first strand
Strand 2
D
70 74anti-parallel
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