Analysis of interatomic Contacts of Structural Units in PDB entry:
8V5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V5D entry

There is 1 chain in PDB entry 8V5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 67LYS 1233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8V5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 89Right-handed alpha
Helix 2
AA2
A
96 110Right-handed alpha
Helix 3
AA3
A
134 159Right-handed alpha
Helix 4
AA4
A
225 230Right-handed alpha
Helix 5
AA5
A
240 244Right-handed 310
Helix 6
AA6
A
271 277Right-handed alpha
Helix 7
AA7
A
278 283Right-handed 310
Helix 8
AA8
A
294 303Right-handed alpha
Helix 9
AA9
A
355 364Right-handed alpha
Helix 10
AB1
A
381 388Right-handed alpha
Helix 11
AB2
A
388 418Right-handed alpha
Helix 12
AB3
A
420 430Right-handed alpha
Helix 13
AB4
A
439 470Right-handed alpha
Helix 14
AB5
A
570 576Right-handed alpha
Helix 15
AB6
A
771 776Right-handed alpha
Helix 16
AB7
A
788 810Right-handed alpha
Helix 17
AB8
A
822 828Right-handed alpha
Helix 18
AB9
A
871 875Right-handed 310
Helix 19
AC1
A
893 908Right-handed alpha
Helix 20
AC2
A
915 923Right-handed alpha
Helix 21
AC3
A
930 940Right-handed alpha
Helix 22
AC4
A
942 956Right-handed alpha
Helix 23
AC5
A
958 970Right-handed alpha
Helix 24
AC6
A
974 989Right-handed alpha
Helix 25
AC7
A
1054 1066Right-handed alpha
Helix 26
AC8
A
1084 1089Right-handed alpha
Helix 27
AC9
A
1092 1123Right-handed alpha
Helix 28
AD1
A
1146 1169Right-handed alpha
Helix 29
AD2
A
1205 1211Right-handed alpha
Helix 30
AD3
A
1219 1228Right-handed alpha
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There are 6 sheets in PDB entry 8V5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
174 178anti-parallel
Strand 3
A
221 224anti-parallel
Strand 4
A
209 214anti-parallel
Strand 5
A
199 201anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
264 268parallel
Strand 3
A
289 293parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 438first strand
Strand 2
A
837 840anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 607first strand
Strand 2
A
779 780anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 615first strand
Strand 2
A
619 625anti-parallel
Strand 3
A
747 749anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1127 1133first strand
Strand 2
A
1136 1142anti-parallel
Strand 3
A
884 890anti-parallel
Strand 4
A
1183 1186anti-parallel
Strand 5
A
1216 1218anti-parallel
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