Analysis of interatomic Contacts of Structural Units in PDB entry:
8V5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V5F entry

There are 4 chains in PDB entry 8V5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2GLU 267
B
 ASP 5ASN 268
C
 GLN 83TRP 266
D
 PRO 4ASN 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8V5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 15Right-handed alpha
Helix 2
AA2
A
18 30Right-handed alpha
Helix 3
AA3
A
31 34Right-handed 310
Helix 4
AA4
A
39 48Right-handed alpha
Helix 5
AA5
A
50 61Right-handed alpha
Helix 6
AA6
A
65 76Right-handed alpha
Helix 7
AA7
A
88 109Right-handed alpha
Helix 8
AA8
A
110 124Right-handed alpha
Helix 9
AA9
A
133 148Right-handed alpha
Helix 10
AB1
A
158 167Right-handed alpha
Helix 11
AB2
A
184 197Right-handed alpha
Helix 12
AB3
A
236 252Right-handed alpha
Helix 13
AB4
A
254 265Right-handed alpha
Helix 14
AB5
B
6 14Right-handed alpha
Helix 15
AB6
B
18 29Right-handed alpha
Helix 16
AB7
B
31 35Right-handed 310
Helix 17
AB8
B
39 48Right-handed alpha
Helix 18
AB9
B
50 61Right-handed alpha
Helix 19
AC1
B
65 80Right-handed alpha
Helix 20
AC2
B
88 109Right-handed alpha
Helix 21
AC3
B
110 124Right-handed alpha
Helix 22
AC4
B
133 148Right-handed alpha
Helix 23
AC5
B
158 167Right-handed alpha
Helix 24
AC6
B
184 197Right-handed alpha
Helix 25
AC7
B
211 215Right-handed 310
Helix 26
AC8
B
228 232Right-handed 310
Helix 27
AC9
B
236 252Right-handed alpha
Helix 28
AD1
B
254 264Right-handed alpha
Helix 29
AD2
C
88 109Right-handed alpha
Helix 30
AD3
C
110 124Right-handed alpha
Helix 31
AD4
C
133 148Right-handed alpha
Helix 32
AD5
C
158 167Right-handed alpha
Helix 33
AD6
C
184 197Right-handed alpha
Helix 34
AD7
C
211 215Right-handed 310
Helix 35
AD8
C
228 232Right-handed 310
Helix 36
AD9
C
236 253Right-handed alpha
Helix 37
AE1
C
254 264Right-handed alpha
Helix 38
AE2
D
5 13Right-handed alpha
Helix 39
AE3
D
14 17Right-handed 310
Helix 40
AE4
D
18 30Right-handed alpha
Helix 41
AE5
D
31 36Right-handed 310
Helix 42
AE6
D
41 48Right-handed alpha
Helix 43
AE7
D
50 61Right-handed alpha
Helix 44
AE8
D
65 78Right-handed alpha
Helix 45
AE9
D
88 109Right-handed alpha
Helix 46
AF1
D
110 124Right-handed alpha
Helix 47
AF2
D
133 148Right-handed alpha
Helix 48
AF3
D
158 167Right-handed alpha
Helix 49
AF4
D
184 197Right-handed alpha
Helix 50
AF5
D
209 215Right-handed 310
Helix 51
AF6
D
228 232Right-handed 310
Helix 52
AF7
D
236 252Right-handed alpha
Helix 53
AF8
D
254 267Right-handed alpha
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There are 4 sheets in PDB entry 8V5F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
126 131parallel
Strand 3
A
173 178parallel
Strand 4
A
200 205parallel
Strand 5
A
217 220parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 156first strand
Strand 2
B
126 130parallel
Strand 3
B
173 178parallel
Strand 4
B
200 205parallel
Strand 5
B
217 220parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
153 156first strand
Strand 2
C
126 131parallel
Strand 3
C
173 178parallel
Strand 4
C
200 205parallel
Strand 5
C
217 220parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
153 156first strand
Strand 2
D
126 131parallel
Strand 3
D
173 178parallel
Strand 4
D
200 205parallel
Strand 5
D
217 220parallel
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