Analysis of interatomic Contacts of Structural Units in PDB entry:
8V5K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V5K entry

There are 6 chains in PDB entry 8V5K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	LEU 481
D	GLU 1	SER 124
G	GLU 1	GLY 129
B	GLN 19	LEU 481
C	GLN 19	LEU 481
E	GLU 1	GLU 1

There are 52 helices in PDB entry 8V5K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	26	Right-handed alpha
Helix 2	AA2	A	64	91	Right-handed alpha
Helix 3	AA3	A	125	154	Right-handed alpha
Helix 4	AA4	A	175	182	Right-handed alpha
Helix 5	AA5	A	182	191	Right-handed alpha
Helix 6	AA6	A	191	215	Right-handed alpha
Helix 7	AA7	A	228	236	Right-handed alpha
Helix 8	AA8	A	252	262	Right-handed alpha
Helix 9	AA9	A	328	331	Right-handed 310
Helix 10	AB1	A	349	357	Right-handed alpha
Helix 11	AB2	A	359	363	Right-handed 310
Helix 12	AB3	A	452	481	Right-handed alpha
Helix 13	AB4	D	26	29	Right-handed 310
Helix 14	AB5	D	89	93	Right-handed 310
Helix 15	AB6	D	107	109	Right-handed 310
Helix 16	AB7	G	82	84	Right-handed 310
Helix 17	AB8	G	95	99	Right-handed 310
Helix 18	AB9	B	21	26	Right-handed alpha
Helix 19	AC1	B	64	91	Right-handed alpha
Helix 20	AC2	B	125	154	Right-handed alpha
Helix 21	AC3	B	175	182	Right-handed alpha
Helix 22	AC4	B	182	190	Right-handed alpha
Helix 23	AC5	B	191	215	Right-handed alpha
Helix 24	AC6	B	227	236	Right-handed alpha
Helix 25	AC7	B	252	262	Right-handed alpha
Helix 26	AC8	B	328	331	Right-handed 310
Helix 27	AC9	B	349	357	Right-handed alpha
Helix 28	AD1	B	359	363	Right-handed 310
Helix 29	AD2	B	452	481	Right-handed alpha
Helix 30	AD3	C	21	26	Right-handed alpha
Helix 31	AD4	C	64	91	Right-handed alpha
Helix 32	AD5	C	125	137	Right-handed alpha
Helix 33	AD6	C	137	154	Right-handed alpha
Helix 34	AD7	C	175	182	Right-handed alpha
Helix 35	AD8	C	182	191	Right-handed alpha
Helix 36	AD9	C	191	215	Right-handed alpha
Helix 37	AE1	C	227	236	Right-handed alpha
Helix 38	AE2	C	252	262	Right-handed alpha
Helix 39	AE3	C	328	331	Right-handed 310
Helix 40	AE4	C	349	357	Right-handed alpha
Helix 41	AE5	C	359	363	Right-handed 310
Helix 42	AE6	C	452	481	Right-handed alpha
Helix 43	AE7	E	27	30	Right-handed 310
Helix 44	AE8	E	95	99	Right-handed 310
Helix 45	AE9	E	112	113	Right-handed 310
Helix 46	AF1	F	27	30	Right-handed 310
Helix 47	AF2	F	95	99	Right-handed 310
Helix 48	AF3	F	112	113	Right-handed 310
Helix 49	AF4	H	82	84	Right-handed 310
Helix 50	AF5	H	95	99	Right-handed 310
Helix 51	AF6	I	82	84	Right-handed 310
Helix 52	AF7	I	95	99	Right-handed 310

There are 33 sheets in PDB entry 8V5K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	160	first strand
Strand 2	A	169	173	anti-parallel
Strand 3	A	30	52	parallel
Strand 4	A	337	340	parallel
Strand 5	A	332	333	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	263	270	anti-parallel
Strand 3	A	275	287	anti-parallel
Strand 4	A	30	52	anti-parallel
Strand 5	A	291	298	anti-parallel
Strand 6	A	315	319	anti-parallel
Strand 7	A	322	326	anti-parallel
Strand 8	A	345	346	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	C	425	428	parallel
Strand 4	C	419	422	anti-parallel
Strand 5	C	392	394	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	C	376	379	anti-parallel
Strand 3	C	382	385	anti-parallel
Strand 4	C	410	412	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	306	309	anti-parallel
Strand 3	A	366	367	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	376	379	anti-parallel
Strand 4	B	122	124	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	394	first strand
Strand 2	A	419	422	anti-parallel
Strand 3	A	425	428	anti-parallel
Strand 4	B	114	118	parallel
Strand 5	B	93	94	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	80	85	anti-parallel
Strand 4	D	70	75	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	118	123	parallel
Strand 3	D	94	101	anti-parallel
Strand 4	D	35	41	anti-parallel
Strand 5	D	48	54	anti-parallel
Strand 6	D	60	61	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	118	123	parallel
Strand 3	D	94	101	anti-parallel
Strand 4	D	111	114	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	7	first strand
Strand 2	G	19	27	anti-parallel
Strand 3	G	86	91	anti-parallel
Strand 4	G	77	81	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	122	126	parallel
Strand 3	G	100	108	anti-parallel
Strand 4	G	36	44	anti-parallel
Strand 5	G	51	57	anti-parallel
Strand 6	G	65	67	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	122	126	parallel
Strand 3	G	100	108	anti-parallel
Strand 4	G	116	118	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	169	173	anti-parallel
Strand 3	B	30	52	parallel
Strand 4	B	337	340	parallel
Strand 5	B	332	333	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	270	first strand
Strand 2	B	275	287	anti-parallel
Strand 3	B	30	52	anti-parallel
Strand 4	B	291	298	anti-parallel
Strand 5	B	315	319	anti-parallel
Strand 6	B	322	326	anti-parallel
Strand 7	B	345	346	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	303	first strand
Strand 2	B	306	309	anti-parallel
Strand 3	B	366	367	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	376	379	anti-parallel
Strand 4	C	122	124	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	394	first strand
Strand 2	B	419	422	anti-parallel
Strand 3	B	425	428	anti-parallel
Strand 4	C	114	118	parallel
Strand 5	C	93	94	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	160	first strand
Strand 2	C	169	173	anti-parallel
Strand 3	C	30	52	parallel
Strand 4	C	337	340	parallel
Strand 5	C	332	333	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	270	first strand
Strand 2	C	275	287	anti-parallel
Strand 3	C	30	52	anti-parallel
Strand 4	C	291	298	anti-parallel
Strand 5	C	315	319	anti-parallel
Strand 6	C	322	326	anti-parallel
Strand 7	C	345	346	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	303	first strand
Strand 2	C	306	309	anti-parallel
Strand 3	C	366	367	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	86	91	anti-parallel
Strand 4	E	76	81	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	14	first strand
Strand 2	E	122	127	parallel
Strand 3	E	100	107	anti-parallel
Strand 4	E	38	44	anti-parallel
Strand 5	E	51	57	anti-parallel
Strand 6	E	65	66	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	14	first strand
Strand 2	E	122	127	parallel
Strand 3	E	100	107	anti-parallel
Strand 4	E	115	118	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	86	91	anti-parallel
Strand 4	F	76	81	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	14	first strand
Strand 2	F	122	127	parallel
Strand 3	F	100	107	anti-parallel
Strand 4	F	38	44	anti-parallel
Strand 5	F	51	57	anti-parallel
Strand 6	F	65	66	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	14	first strand
Strand 2	F	122	127	parallel
Strand 3	F	100	107	anti-parallel
Strand 4	F	115	118	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	7	first strand
Strand 2	H	19	27	anti-parallel
Strand 3	H	86	91	anti-parallel
Strand 4	H	77	81	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	122	126	parallel
Strand 3	H	100	108	anti-parallel
Strand 4	H	36	44	anti-parallel
Strand 5	H	51	57	anti-parallel
Strand 6	H	65	67	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	122	126	parallel
Strand 3	H	100	108	anti-parallel
Strand 4	H	116	118	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	7	first strand
Strand 2	I	18	27	anti-parallel
Strand 3	I	86	92	anti-parallel
Strand 4	I	77	81	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	13	first strand
Strand 2	I	122	126	parallel
Strand 3	I	100	108	anti-parallel
Strand 4	I	36	44	anti-parallel
Strand 5	I	51	57	anti-parallel
Strand 6	I	65	67	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	13	first strand
Strand 2	I	122	126	parallel
Strand 3	I	100	108	anti-parallel
Strand 4	I	116	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V5K

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V5K