Analysis of interatomic Contacts of Structural Units in PDB entry:
8V5M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V5M entry

There are 4 chains in PDB entry 8V5M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1271	GLN 1452
B	GLN 159	VAL 598
C	THR 16	ILE 264
D	TYR 6	GLU 409

There are 53 helices in PDB entry 8V5M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1296	1300	Right-handed 310
Helix 2	AA2	A	1304	1306	Right-handed 310
Helix 3	AA3	A	1315	1318	Right-handed 310
Helix 4	AA4	A	1319	1340	Right-handed alpha
Helix 5	AA5	A	1381	1395	Right-handed alpha
Helix 6	AA6	A	1397	1404	Right-handed alpha
Helix 7	AA7	A	1407	1415	Right-handed alpha
Helix 8	AA8	A	1419	1439	Right-handed alpha
Helix 9	AA9	A	1447	1451	Right-handed alpha
Helix 10	AB1	B	212	236	Right-handed alpha
Helix 11	AB2	B	275	280	Right-handed alpha
Helix 12	AB3	B	331	335	Right-handed 310
Helix 13	AB4	B	357	371	Right-handed alpha
Helix 14	AB5	B	386	391	Right-handed alpha
Helix 15	AB6	B	397	413	Right-handed alpha
Helix 16	AB7	B	475	482	Right-handed alpha
Helix 17	AB8	B	494	506	Right-handed alpha
Helix 18	AB9	B	521	529	Right-handed alpha
Helix 19	AC1	C	41	65	Right-handed alpha
Helix 20	AC2	C	69	84	Right-handed alpha
Helix 21	AC3	C	95	116	Right-handed alpha
Helix 22	AC4	C	119	140	Right-handed alpha
Helix 23	AC5	C	142	153	Right-handed alpha
Helix 24	AC6	C	161	168	Right-handed alpha
Helix 25	AC7	C	168	176	Right-handed alpha
Helix 26	AC8	C	180	186	Right-handed alpha
Helix 27	AC9	C	197	202	Right-handed alpha
Helix 28	AD1	C	219	242	Right-handed alpha
Helix 29	AD2	C	243	248	Right-handed alpha
Helix 30	AD3	C	249	251	Right-handed 310
Helix 31	AD4	C	252	257	Right-handed alpha
Helix 32	AD5	C	258	262	Right-handed 310
Helix 33	AD6	D	7	9	Right-handed 310
Helix 34	AD7	D	10	22	Right-handed alpha
Helix 35	AD8	D	24	34	Right-handed alpha
Helix 36	AD9	D	35	37	Right-handed 310
Helix 37	AE1	D	64	76	Right-handed alpha
Helix 38	AE2	D	89	96	Right-handed 310
Helix 39	AE3	D	115	121	Right-handed 310
Helix 40	AE4	D	133	151	Right-handed alpha
Helix 41	AE5	D	173	178	Right-handed alpha
Helix 42	AE6	D	180	192	Right-handed alpha
Helix 43	AE7	D	211	230	Right-handed alpha
Helix 44	AE8	D	238	248	Right-handed alpha
Helix 45	AE9	D	250	263	Right-handed alpha
Helix 46	AF1	D	266	281	Right-handed alpha
Helix 47	AF2	D	286	289	Right-handed 310
Helix 48	AF3	D	290	301	Right-handed alpha
Helix 49	AF4	D	305	311	Right-handed alpha
Helix 50	AF5	D	335	341	Right-handed 310
Helix 51	AF6	D	348	357	Right-handed alpha
Helix 52	AF7	D	381	386	Right-handed 310
Helix 53	AF8	D	388	409	Right-handed alpha

There are 13 sheets in PDB entry 8V5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1276	1279	first strand
Strand 2	A	1286	1289	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1293	1294	first strand
Strand 2	A	1301	1302	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1353	1354	first strand
Strand 2	A	1343	1345	anti-parallel
Strand 3	A	1376	1378	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1444	1446	first strand
Strand 2	C	38	40	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	590	597	anti-parallel
Strand 3	B	570	576	anti-parallel
Strand 4	B	340	346	anti-parallel
Strand 5	B	374	378	parallel
Strand 6	B	419	423	parallel
Strand 7	B	453	455	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	460	464	anti-parallel
Strand 3	B	467	471	anti-parallel
Strand 4	B	537	539	parallel
Strand 5	B	554	558	parallel
Strand 6	B	547	551	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	270	273	anti-parallel
Strand 3	B	247	259	anti-parallel
Strand 4	B	301	308	anti-parallel
Strand 5	B	315	319	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	485	486	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	567	568	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	193	first strand
Strand 2	C	212	215	anti-parallel
Strand 3	C	208	209	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	60	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	79	86	anti-parallel
Strand 4	D	103	105	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	60	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	79	86	anti-parallel
Strand 4	D	316	317	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	113	first strand
Strand 2	D	166	171	anti-parallel
Strand 3	D	157	161	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V5M

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V5M