Analysis of interatomic Contacts of Structural Units in PDB entry:
8V5P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V5P entry

There are 12 chains in PDB entry 8V5P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 305	PHE 479
H	GLN 1	PRO 218
L	ASP 1	THR 210
D	GLN 305	PHE 479
E	GLN 1	PRO 218
Y	ASP 1	THR 209
G	GLN 305	PHE 479
J	GLN 1	PRO 218
X	ASP 1	THR 209
C	GLN 305	PHE 479
F	GLN 1	PRO 218
I	ASP 1	THR 209

There are 37 helices in PDB entry 8V5P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	365	367	Right-handed 310
Helix 2	AA2	A	387	391	Right-handed 310
Helix 3	AA3	A	408	412	Right-handed 310
Helix 4	AA4	A	428	430	Right-handed 310
Helix 5	AA5	A	439	443	Right-handed 310
Helix 6	AA6	H	61	64	Right-handed 310
Helix 7	AA7	H	73	75	Right-handed 310
Helix 8	AA8	H	83	87	Right-handed 310
Helix 9	AA9	L	122	128	Right-handed alpha
Helix 10	AB1	L	182	189	Right-handed alpha
Helix 11	AB2	D	365	367	Right-handed 310
Helix 12	AB3	D	439	443	Right-handed 310
Helix 13	AB4	E	61	64	Right-handed 310
Helix 14	AB5	E	83	87	Right-handed 310
Helix 15	AB6	E	161	163	Right-handed 310
Helix 16	AB7	E	190	194	Right-handed 310
Helix 17	AB8	Y	121	126	Right-handed alpha
Helix 18	AB9	Y	181	187	Right-handed alpha
Helix 19	AC1	G	365	367	Right-handed 310
Helix 20	AC2	G	372	377	Right-handed alpha
Helix 21	AC3	G	387	391	Right-handed 310
Helix 22	AC4	G	439	443	Right-handed 310
Helix 23	AC5	J	61	64	Right-handed 310
Helix 24	AC6	J	83	87	Right-handed 310
Helix 25	AC7	J	161	163	Right-handed 310
Helix 26	AC8	J	190	194	Right-handed 310
Helix 27	AC9	X	121	127	Right-handed alpha
Helix 28	AD1	X	181	188	Right-handed alpha
Helix 29	AD2	C	365	367	Right-handed 310
Helix 30	AD3	C	372	377	Right-handed alpha
Helix 31	AD4	C	387	391	Right-handed 310
Helix 32	AD5	C	439	443	Right-handed 310
Helix 33	AD6	F	61	64	Right-handed 310
Helix 34	AD7	F	73	75	Right-handed 310
Helix 35	AD8	F	83	87	Right-handed 310
Helix 36	AD9	I	121	127	Right-handed alpha
Helix 37	AE1	I	181	188	Right-handed alpha

There are 55 sheets in PDB entry 8V5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	312	first strand
Strand 2	A	334	337	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	320	first strand
Strand 2	A	455	465	parallel
Strand 3	A	444	452	anti-parallel
Strand 4	A	342	351	anti-parallel
Strand 5	A	392	402	anti-parallel
Strand 6	A	415	418	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	330	first strand
Strand 2	A	432	434	anti-parallel
Strand 3	A	425	426	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	363	first strand
Strand 2	A	473	476	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	105	108	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	141	150	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	168	170	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	141	150	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	174	176	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	199	205	anti-parallel
Strand 3	H	210	216	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	160	163	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	155	156	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	197	anti-parallel
Strand 4	L	202	207	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	309	312	first strand
Strand 2	D	334	337	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	320	first strand
Strand 2	D	455	465	parallel
Strand 3	D	444	452	anti-parallel
Strand 4	D	342	351	anti-parallel
Strand 5	D	392	402	anti-parallel
Strand 6	D	415	416	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	330	first strand
Strand 2	D	432	435	anti-parallel
Strand 3	D	424	426	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	385	first strand
Strand 2	D	359	363	parallel
Strand 3	D	472	476	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	112	116	parallel
Strand 3	E	88	95	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	112	116	parallel
Strand 3	E	88	95	anti-parallel
Strand 4	E	105	108	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	141	150	anti-parallel
Strand 3	E	180	189	anti-parallel
Strand 4	E	168	170	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	141	150	anti-parallel
Strand 3	E	180	189	anti-parallel
Strand 4	E	174	176	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	159	first strand
Strand 2	E	199	205	anti-parallel
Strand 3	E	210	216	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	4	7	first strand
Strand 2	Y	19	25	anti-parallel
Strand 3	Y	70	75	anti-parallel
Strand 4	Y	62	67	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	10	13	first strand
Strand 2	Y	102	106	parallel
Strand 3	Y	85	90	anti-parallel
Strand 4	Y	33	38	anti-parallel
Strand 5	Y	45	49	anti-parallel
Strand 6	Y	53	54	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	114	118	first strand
Strand 2	Y	130	137	anti-parallel
Strand 3	Y	173	180	anti-parallel
Strand 4	Y	159	161	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	146	149	first strand
Strand 2	Y	191	196	anti-parallel
Strand 3	Y	201	206	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	309	312	first strand
Strand 2	G	334	337	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	317	320	first strand
Strand 2	G	455	465	parallel
Strand 3	G	444	452	anti-parallel
Strand 4	G	342	351	anti-parallel
Strand 5	G	392	402	anti-parallel
Strand 6	G	415	418	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	327	330	first strand
Strand 2	G	432	435	anti-parallel
Strand 3	G	424	427	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	359	363	first strand
Strand 2	G	472	476	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	59	first strand
Strand 2	J	46	51	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	88	95	anti-parallel
Strand 5	J	105	108	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	59	first strand
Strand 2	J	46	51	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	88	95	anti-parallel
Strand 5	J	112	114	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	125	129	first strand
Strand 2	J	141	148	anti-parallel
Strand 3	J	180	189	anti-parallel
Strand 4	J	168	170	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	125	129	first strand
Strand 2	J	141	148	anti-parallel
Strand 3	J	180	189	anti-parallel
Strand 4	J	174	176	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	156	159	first strand
Strand 2	J	200	205	anti-parallel
Strand 3	J	210	215	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	4	7	first strand
Strand 2	X	19	25	anti-parallel
Strand 3	X	70	75	anti-parallel
Strand 4	X	62	67	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	10	13	first strand
Strand 2	X	102	106	parallel
Strand 3	X	85	90	anti-parallel
Strand 4	X	33	38	anti-parallel
Strand 5	X	44	49	anti-parallel
Strand 6	X	53	54	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	114	118	first strand
Strand 2	X	130	139	anti-parallel
Strand 3	X	172	180	anti-parallel
Strand 4	X	159	161	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	146	149	first strand
Strand 2	X	191	195	anti-parallel
Strand 3	X	202	206	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	312	first strand
Strand 2	C	334	337	anti-parallel

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There are 12 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	417	first strand
Strand 2	C	392	402	anti-parallel
Strand 3	C	342	351	anti-parallel
Strand 4	C	444	452	anti-parallel
Strand 5	C	455	464	anti-parallel
Strand 6	C	317	319	parallel
Strand 7	F	56	59	anti-parallel
Strand 8	F	46	51	anti-parallel
Strand 9	F	33	39	anti-parallel
Strand 10	F	88	95	anti-parallel
Strand 11	F	112	116	anti-parallel
Strand 12	F	11	12	parallel

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There are 11 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	417	first strand
Strand 2	C	392	402	anti-parallel
Strand 3	C	342	351	anti-parallel
Strand 4	C	444	452	anti-parallel
Strand 5	C	455	464	anti-parallel
Strand 6	C	317	319	parallel
Strand 7	F	56	59	anti-parallel
Strand 8	F	46	51	anti-parallel
Strand 9	F	33	39	anti-parallel
Strand 10	F	88	95	anti-parallel
Strand 11	F	105	108	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	330	first strand
Strand 2	C	432	435	anti-parallel
Strand 3	C	424	426	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	384	385	first strand
Strand 2	C	360	363	parallel
Strand 3	C	473	476	parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	129	first strand
Strand 2	F	141	150	anti-parallel
Strand 3	F	180	189	anti-parallel
Strand 4	F	168	170	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	129	first strand
Strand 2	F	141	150	anti-parallel
Strand 3	F	180	189	anti-parallel
Strand 4	F	174	176	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	159	first strand
Strand 2	F	199	205	anti-parallel
Strand 3	F	210	216	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	67	anti-parallel

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There are 6 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	49	anti-parallel
Strand 6	I	53	54	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	114	118	first strand
Strand 2	I	130	139	anti-parallel
Strand 3	I	172	180	anti-parallel
Strand 4	I	159	162	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	155	first strand
Strand 2	I	145	150	anti-parallel
Strand 3	I	191	196	anti-parallel
Strand 4	I	201	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V5P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V5P