Analysis of interatomic Contacts of Structural Units in PDB entry:
8V5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V5R entry

There are 5 chains in PDB entry 8V5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 67SER 1235
B
 GLY 63LYS 483
C
 GLY 63VAL 485
P
 T 5 A 23
T
 G 3 A 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 77 helices in PDB entry 8V5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 89Right-handed alpha
Helix 2
AA2
A
96 110Right-handed alpha
Helix 3
AA3
A
134 159Right-handed alpha
Helix 4
AA4
A
225 230Right-handed alpha
Helix 5
AA5
A
240 244Right-handed 310
Helix 6
AA6
A
271 276Right-handed alpha
Helix 7
AA7
A
277 283Right-handed 310
Helix 8
AA8
A
294 303Right-handed alpha
Helix 9
AA9
A
305 318Right-handed alpha
Helix 10
AB1
A
345 351Right-handed 310
Helix 11
AB2
A
355 364Right-handed alpha
Helix 12
AB3
A
381 388Right-handed alpha
Helix 13
AB4
A
388 418Right-handed alpha
Helix 14
AB5
A
420 430Right-handed alpha
Helix 15
AB6
A
439 471Right-handed alpha
Helix 16
AB7
A
472 478Right-handed 310
Helix 17
AB8
A
534 554Right-handed alpha
Helix 18
AB9
A
555 557Right-handed 310
Helix 19
AC1
A
570 576Right-handed alpha
Helix 20
AC2
A
598 603Right-handed alpha
Helix 21
AC3
A
767 769Right-handed 310
Helix 22
AC4
A
770 776Right-handed alpha
Helix 23
AC5
A
788 798Right-handed alpha
Helix 24
AC6
A
798 809Right-handed alpha
Helix 25
AC7
A
822 828Right-handed alpha
Helix 26
AC8
A
858 862Right-handed 310
Helix 27
AC9
A
874 878Right-handed 310
Helix 28
AD1
A
893 908Right-handed alpha
Helix 29
AD2
A
914 922Right-handed alpha
Helix 30
AD3
A
930 940Right-handed alpha
Helix 31
AD4
A
942 956Right-handed alpha
Helix 32
AD5
A
958 970Right-handed alpha
Helix 33
AD6
A
974 989Right-handed alpha
Helix 34
AD7
A
1054 1066Right-handed alpha
Helix 35
AD8
A
1080 1083Right-handed 310
Helix 36
AD9
A
1084 1089Right-handed alpha
Helix 37
AE1
A
1092 1124Right-handed alpha
Helix 38
AE2
A
1145 1168Right-handed alpha
Helix 39
AE3
A
1174 1178Right-handed 310
Helix 40
AE4
A
1205 1211Right-handed alpha
Helix 41
AE5
A
1219 1228Right-handed alpha
Helix 42
AE6
B
64 76Right-handed alpha
Helix 43
AE7
B
82 86Right-handed 310
Helix 44
AE8
B
87 93Right-handed alpha
Helix 45
AE9
B
100 119Right-handed alpha
Helix 46
AF1
B
149 159Right-handed alpha
Helix 47
AF2
B
163 177Right-handed alpha
Helix 48
AF3
B
185 192Right-handed alpha
Helix 49
AF4
B
192 200Right-handed alpha
Helix 50
AF5
B
244 246Right-handed 310
Helix 51
AF6
B
247 266Right-handed alpha
Helix 52
AF7
B
269 271Right-handed 310
Helix 53
AF8
B
308 315Right-handed alpha
Helix 54
AF9
B
342 354Right-handed alpha
Helix 55
AG1
B
391 409Right-handed alpha
Helix 56
AG2
B
417 419Right-handed 310
Helix 57
AG3
B
424 435Right-handed alpha
Helix 58
AG4
B
444 450Right-handed alpha
Helix 59
AG5
B
470 483Right-handed alpha
Helix 60
AG6
C
64 76Right-handed alpha
Helix 61
AG7
C
82 86Right-handed 310
Helix 62
AG8
C
87 93Right-handed alpha
Helix 63
AG9
C
100 119Right-handed alpha
Helix 64
AH1
C
149 159Right-handed alpha
Helix 65
AH2
C
163 177Right-handed alpha
Helix 66
AH3
C
185 192Right-handed alpha
Helix 67
AH4
C
192 200Right-handed alpha
Helix 68
AH5
C
244 246Right-handed 310
Helix 69
AH6
C
247 266Right-handed alpha
Helix 70
AH7
C
269 271Right-handed 310
Helix 71
AH8
C
308 315Right-handed alpha
Helix 72
AH9
C
342 354Right-handed alpha
Helix 73
AI1
C
391 409Right-handed alpha
Helix 74
AI2
C
417 419Right-handed 310
Helix 75
AI3
C
424 435Right-handed alpha
Helix 76
AI4
C
444 450Right-handed alpha
Helix 77
AI5
C
470 485Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 8V5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
174 178anti-parallel
Strand 3
A
220 224anti-parallel
Strand 4
A
209 215anti-parallel
Strand 5
A
194 201anti-parallel
Strand 6
A
264 268parallel
Strand 7
A
289 293parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 438first strand
Strand 2
A
837 840anti-parallel
Strand 3
A
814 815anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 607first strand
Strand 2
A
779 780anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 615first strand
Strand 2
A
619 625anti-parallel
Strand 3
A
747 751anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1127 1133first strand
Strand 2
A
1136 1142anti-parallel
Strand 3
A
884 890anti-parallel
Strand 4
A
1183 1186anti-parallel
Strand 5
A
1216 1218anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
206 218parallel
Strand 3
B
230 243anti-parallel
Strand 4
B
334 341anti-parallel
Strand 5
B
296 307anti-parallel
Strand 6
B
285 293anti-parallel
Strand 7
B
273 279anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 135first strand
Strand 2
B
179 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 148first strand
Strand 2
C
146 148anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 326first strand
Strand 2
B
329 331anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 415first strand
Strand 2
B
383 387parallel
Strand 3
B
439 443parallel
Strand 4
B
452 457anti-parallel
Strand 5
B
463 467anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
206 218parallel
Strand 3
C
230 243anti-parallel
Strand 4
C
334 341anti-parallel
Strand 5
C
296 307anti-parallel
Strand 6
C
285 293anti-parallel
Strand 7
C
273 279anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 134first strand
Strand 2
C
180 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 326first strand
Strand 2
C
329 331anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
413 415first strand
Strand 2
C
383 387parallel
Strand 3
C
439 443parallel
Strand 4
C
452 457anti-parallel
Strand 5
C
463 467anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il