Analysis of interatomic Contacts of Structural Units in PDB entry:
8V5S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V5S entry

There are 6 chains in PDB entry 8V5S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	PRO 218
L	ASP 1	THR 210
A	GLN 1	PRO 218
B	ASP 1	THR 210
C	GLN 305	THR 466
D	GLN 305	THR 466

There are 11 helices in PDB entry 8V5S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	83	87	Right-handed 310
Helix 2	AA2	L	122	128	Right-handed alpha
Helix 3	AA3	L	182	189	Right-handed alpha
Helix 4	AA4	A	83	87	Right-handed 310
Helix 5	AA5	B	122	127	Right-handed alpha
Helix 6	AA6	B	182	188	Right-handed alpha
Helix 7	AA7	C	427	431	Right-handed 310
Helix 8	AA8	C	439	443	Right-handed 310
Helix 9	AA9	D	408	412	Right-handed 310
Helix 10	AB1	D	427	430	Right-handed 310
Helix 11	AB2	D	439	443	Right-handed 310

There are 24 sheets in PDB entry 8V5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	105	108	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	141	150	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	168	170	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	141	150	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	174	176	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	159	first strand
Strand 2	H	199	205	anti-parallel
Strand 3	H	210	216	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel
Strand 5	L	102	106	anti-parallel
Strand 6	L	10	13	parallel
Strand 7	B	10	13	anti-parallel
Strand 8	B	102	106	parallel
Strand 9	B	85	90	anti-parallel
Strand 10	B	33	38	anti-parallel
Strand 11	B	45	49	anti-parallel
Strand 12	B	53	54	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	138	anti-parallel
Strand 3	L	176	181	anti-parallel
Strand 4	L	160	163	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	155	156	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	197	anti-parallel
Strand 4	L	203	207	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	112	116	parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	46	51	anti-parallel
Strand 6	A	57	59	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	112	116	parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	105	108	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	129	first strand
Strand 2	A	141	150	anti-parallel
Strand 3	A	180	189	anti-parallel
Strand 4	A	168	170	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	129	first strand
Strand 2	A	141	150	anti-parallel
Strand 3	A	180	189	anti-parallel
Strand 4	A	174	176	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	159	first strand
Strand 2	A	199	205	anti-parallel
Strand 3	A	210	216	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	119	first strand
Strand 2	B	131	138	anti-parallel
Strand 3	B	176	181	anti-parallel
Strand 4	B	160	163	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	146	151	anti-parallel
Strand 3	B	192	197	anti-parallel
Strand 4	B	203	207	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	312	first strand
Strand 2	C	334	337	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	320	first strand
Strand 2	C	455	465	parallel
Strand 3	C	444	452	anti-parallel
Strand 4	C	342	351	anti-parallel
Strand 5	C	392	402	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	309	312	first strand
Strand 2	D	334	337	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	320	first strand
Strand 2	D	455	465	parallel
Strand 3	D	444	452	anti-parallel
Strand 4	D	342	351	anti-parallel
Strand 5	D	393	402	anti-parallel
Strand 6	D	415	418	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	330	first strand
Strand 2	D	432	434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V5S

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V5S