Analysis of interatomic Contacts of Structural Units in PDB entry:
8V5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V5T entry

There are 2 chains in PDB entry 8V5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 72LEU 490
B
 GLN 72LEU 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8V5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 115Right-handed alpha
Helix 2
AA2
A
130 135Right-handed alpha
Helix 3
AA3
A
138 140Right-handed 310
Helix 4
AA4
A
141 152Right-handed alpha
Helix 5
AA5
A
174 183Right-handed alpha
Helix 6
AA6
A
191 197Right-handed alpha
Helix 7
AA7
A
221 226Right-handed alpha
Helix 8
AA8
A
237 255Right-handed alpha
Helix 9
AA9
A
266 270Right-handed 310
Helix 10
AB1
A
296 300Right-handed 310
Helix 11
AB2
A
306 318Right-handed alpha
Helix 12
AB3
A
343 357Right-handed alpha
Helix 13
AB4
A
373 383Right-handed alpha
Helix 14
AB5
A
405 409Right-handed 310
Helix 15
AB6
A
435 440Right-handed alpha
Helix 16
AB7
A
454 470Right-handed alpha
Helix 17
AB8
A
479 483Right-handed 310
Helix 18
AB9
B
104 115Right-handed alpha
Helix 19
AC1
B
130 135Right-handed alpha
Helix 20
AC2
B
138 140Right-handed 310
Helix 21
AC3
B
141 153Right-handed alpha
Helix 22
AC4
B
154 158Right-handed 310
Helix 23
AC5
B
174 183Right-handed alpha
Helix 24
AC6
B
191 197Right-handed alpha
Helix 25
AC7
B
221 226Right-handed alpha
Helix 26
AC8
B
237 255Right-handed alpha
Helix 27
AC9
B
266 270Right-handed 310
Helix 28
AD1
B
296 300Right-handed 310
Helix 29
AD2
B
307 318Right-handed alpha
Helix 30
AD3
B
343 357Right-handed alpha
Helix 31
AD4
B
373 383Right-handed alpha
Helix 32
AD5
B
405 409Right-handed 310
Helix 33
AD6
B
435 440Right-handed alpha
Helix 34
AD7
B
454 470Right-handed alpha
Helix 35
AD8
B
479 483Right-handed 310
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There are 7 sheets in PDB entry 8V5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 190first strand
Strand 2
A
160 166parallel
Strand 3
A
119 124parallel
Strand 4
A
204 207anti-parallel
Strand 5
A
211 215anti-parallel
Strand 6
A
229 235anti-parallel
Strand 7
A
80 88anti-parallel
Strand 8
A
279 283parallel
Strand 9
A
286 295anti-parallel
Strand 10
A
443 449anti-parallel
Strand 11
A
425 429anti-parallel
Strand 12
A
418 422anti-parallel
Strand 13
A
321 326anti-parallel
Strand 14
A
359 365parallel
Strand 15
A
392 398parallel
Strand 16
A
473 474anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
219 220parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
433 434parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 190first strand
Strand 2
B
160 166parallel
Strand 3
B
119 124parallel
Strand 4
B
204 207anti-parallel
Strand 5
B
211 215anti-parallel
Strand 6
B
229 235anti-parallel
Strand 7
B
80 88anti-parallel
Strand 8
B
279 283parallel
Strand 9
B
286 295anti-parallel
Strand 10
B
305 306parallel
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There are 16 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 190first strand
Strand 2
B
160 166parallel
Strand 3
B
119 124parallel
Strand 4
B
204 207anti-parallel
Strand 5
B
211 215anti-parallel
Strand 6
B
229 235anti-parallel
Strand 7
B
80 88anti-parallel
Strand 8
B
279 283parallel
Strand 9
B
286 295anti-parallel
Strand 10
B
443 449anti-parallel
Strand 11
B
426 429anti-parallel
Strand 12
B
418 422anti-parallel
Strand 13
B
321 326anti-parallel
Strand 14
B
359 365parallel
Strand 15
B
392 398parallel
Strand 16
B
473 475anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
219 220parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 333first strand
Strand 2
B
340 341anti-parallel
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