Analysis of interatomic Contacts of Structural Units in PDB entry:
8V5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V5V entry

There are 9 chains in PDB entry 8V5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ALA 706	LYS 1149
E	ALA 706	LYS 1149
F	ALA 706	LYS 1149
d	ILE 2	ASP 107
g	ILE 2	ASP 107
f	GLN 1	VAL 125
c	GLN 1	VAL 125
e	ILE 2	ASP 107
b	GLN 1	VAL 125

There are 45 helices in PDB entry 8V5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	737	742	Right-handed alpha
Helix 2	AA2	G	749	783	Right-handed alpha
Helix 3	AA3	G	816	826	Right-handed alpha
Helix 4	AA4	G	832	842	Right-handed alpha
Helix 5	AA5	G	847	855	Right-handed alpha
Helix 6	AA6	G	866	883	Right-handed alpha
Helix 7	AA7	G	897	910	Right-handed alpha
Helix 8	AA8	G	912	919	Right-handed alpha
Helix 9	AA9	G	919	941	Right-handed alpha
Helix 10	AB1	G	945	967	Right-handed alpha
Helix 11	AB2	G	976	984	Right-handed alpha
Helix 12	AB3	G	985	1033	Right-handed alpha
Helix 13	AB4	G	1140	1149	Right-handed alpha
Helix 14	AB5	E	737	742	Right-handed alpha
Helix 15	AB6	E	749	783	Right-handed alpha
Helix 16	AB7	E	816	826	Right-handed alpha
Helix 17	AB8	E	832	842	Right-handed alpha
Helix 18	AB9	E	847	855	Right-handed alpha
Helix 19	AC1	E	866	883	Right-handed alpha
Helix 20	AC2	E	897	910	Right-handed alpha
Helix 21	AC3	E	912	919	Right-handed alpha
Helix 22	AC4	E	919	941	Right-handed alpha
Helix 23	AC5	E	945	967	Right-handed alpha
Helix 24	AC6	E	976	984	Right-handed alpha
Helix 25	AC7	E	985	1033	Right-handed alpha
Helix 26	AC8	E	1140	1149	Right-handed alpha
Helix 27	AC9	F	737	742	Right-handed alpha
Helix 28	AD1	F	749	783	Right-handed alpha
Helix 29	AD2	F	816	826	Right-handed alpha
Helix 30	AD3	F	832	842	Right-handed alpha
Helix 31	AD4	F	847	855	Right-handed alpha
Helix 32	AD5	F	866	883	Right-handed alpha
Helix 33	AD6	F	897	910	Right-handed alpha
Helix 34	AD7	F	912	919	Right-handed alpha
Helix 35	AD8	F	919	941	Right-handed alpha
Helix 36	AD9	F	945	967	Right-handed alpha
Helix 37	AE1	F	976	984	Right-handed alpha
Helix 38	AE2	F	985	1033	Right-handed alpha
Helix 39	AE3	F	1140	1149	Right-handed alpha
Helix 40	AE4	d	79	83	Right-handed 310
Helix 41	AE5	g	79	83	Right-handed 310
Helix 42	AE6	f	87	91	Right-handed 310
Helix 43	AE7	c	87	91	Right-handed 310
Helix 44	AE8	e	79	83	Right-handed 310
Helix 45	AE9	b	87	91	Right-handed 310

There are 34 sheets in PDB entry 8V5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	711	714	first strand
Strand 2	G	1073	1077	anti-parallel
Strand 3	G	1094	1097	anti-parallel
Strand 4	G	1102	1105	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	717	728	first strand
Strand 2	G	1059	1070	anti-parallel
Strand 3	G	1047	1051	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	717	728	first strand
Strand 2	G	1059	1070	anti-parallel
Strand 3	G	1054	1056	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	733	735	first strand
Strand 2	G	859	861	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	796	797	first strand
Strand 2	G	800	801	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1120	1122	first strand
Strand 2	G	1087	1090	anti-parallel
Strand 3	G	1080	1082	anti-parallel
Strand 4	G	1132	1134	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	711	714	first strand
Strand 2	E	1073	1076	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	717	728	first strand
Strand 2	E	1059	1070	anti-parallel
Strand 3	E	1047	1051	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	717	728	first strand
Strand 2	E	1059	1070	anti-parallel
Strand 3	E	1054	1056	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	733	735	first strand
Strand 2	E	859	861	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	796	797	first strand
Strand 2	E	800	801	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1120	1122	first strand
Strand 2	E	1087	1090	anti-parallel
Strand 3	E	1080	1082	anti-parallel
Strand 4	E	1132	1134	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1094	1097	first strand
Strand 2	E	1102	1105	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	711	714	first strand
Strand 2	F	1073	1077	anti-parallel
Strand 3	F	1094	1097	anti-parallel
Strand 4	F	1102	1105	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	717	728	first strand
Strand 2	F	1059	1070	anti-parallel
Strand 3	F	1047	1051	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	717	728	first strand
Strand 2	F	1059	1070	anti-parallel
Strand 3	F	1054	1056	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	733	735	first strand
Strand 2	F	859	861	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	796	797	first strand
Strand 2	F	800	801	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1120	1122	first strand
Strand 2	F	1087	1090	anti-parallel
Strand 3	F	1080	1082	anti-parallel
Strand 4	F	1132	1134	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	4	7	first strand
Strand 2	d	19	25	anti-parallel
Strand 3	d	70	75	anti-parallel
Strand 4	d	62	67	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	53	54	first strand
Strand 2	d	45	49	anti-parallel
Strand 3	d	33	38	anti-parallel
Strand 4	d	85	90	anti-parallel
Strand 5	d	104	105	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	4	7	first strand
Strand 2	g	19	25	anti-parallel
Strand 3	g	70	75	anti-parallel
Strand 4	g	62	67	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	53	54	first strand
Strand 2	g	45	49	anti-parallel
Strand 3	g	33	38	anti-parallel
Strand 4	g	85	90	anti-parallel
Strand 5	g	104	105	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	3	6	first strand
Strand 2	f	19	25	anti-parallel
Strand 3	f	78	83	anti-parallel
Strand 4	f	68	73	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	10	11	first strand
Strand 2	f	121	124	parallel
Strand 3	f	93	100	anti-parallel
Strand 4	f	34	39	anti-parallel
Strand 5	f	45	51	anti-parallel
Strand 6	f	58	60	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	10	11	first strand
Strand 2	f	121	124	parallel
Strand 3	f	93	100	anti-parallel
Strand 4	f	113	117	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	3	6	first strand
Strand 2	c	18	25	anti-parallel
Strand 3	c	78	83	anti-parallel
Strand 4	c	68	73	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	10	11	first strand
Strand 2	c	121	124	parallel
Strand 3	c	93	100	anti-parallel
Strand 4	c	34	39	anti-parallel
Strand 5	c	45	51	anti-parallel
Strand 6	c	58	60	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	10	11	first strand
Strand 2	c	121	124	parallel
Strand 3	c	93	100	anti-parallel
Strand 4	c	113	117	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	4	7	first strand
Strand 2	e	19	25	anti-parallel
Strand 3	e	70	75	anti-parallel
Strand 4	e	62	67	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	53	54	first strand
Strand 2	e	45	49	anti-parallel
Strand 3	e	33	38	anti-parallel
Strand 4	e	85	90	anti-parallel
Strand 5	e	104	105	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	3	6	first strand
Strand 2	b	18	25	anti-parallel
Strand 3	b	78	83	anti-parallel
Strand 4	b	68	73	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	10	11	first strand
Strand 2	b	121	124	parallel
Strand 3	b	93	100	anti-parallel
Strand 4	b	34	39	anti-parallel
Strand 5	b	45	51	anti-parallel
Strand 6	b	58	60	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	10	11	first strand
Strand 2	b	121	124	parallel
Strand 3	b	93	100	anti-parallel
Strand 4	b	113	117	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V5V