Analysis of interatomic Contacts of Structural Units in PDB entry:
8V63

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V63 entry

There are 4 chains in PDB entry 8V63 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	SER 1057
B	GLN 19	SER 1057
C	GLN 19	SER 1057
D	GLN 19	SER 1057

There are188 helices in PDB entry 8V63. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	46	Right-handed alpha
Helix 2	AA2	A	94	106	Right-handed alpha
Helix 3	AA3	A	109	134	Right-handed alpha
Helix 4	AA4	A	147	169	Right-handed alpha
Helix 5	AA5	A	173	179	Right-handed alpha
Helix 6	AA6	A	180	188	Right-handed alpha
Helix 7	AA7	A	189	200	Right-handed alpha
Helix 8	AA8	A	206	215	Right-handed 310
Helix 9	AA9	A	216	224	Right-handed alpha
Helix 10	AB1	A	229	260	Right-handed alpha
Helix 11	AB2	A	261	265	Right-handed 310
Helix 12	AB3	A	273	286	Right-handed alpha
Helix 13	AB4	A	297	327	Right-handed alpha
Helix 14	AB5	A	352	364	Right-handed alpha
Helix 15	AB6	A	384	394	Right-handed alpha
Helix 16	AB7	A	407	414	Right-handed alpha
Helix 17	AB8	A	415	419	Right-handed 310
Helix 18	AB9	A	432	451	Right-handed alpha
Helix 19	AC1	A	463	472	Right-handed 310
Helix 20	AC2	A	486	500	Right-handed alpha
Helix 21	AC3	A	502	511	Right-handed alpha
Helix 22	AC4	A	523	532	Right-handed alpha
Helix 23	AC5	A	542	546	Right-handed 310
Helix 24	AC6	A	549	560	Right-handed alpha
Helix 25	AC7	A	602	605	Right-handed 310
Helix 26	AC8	A	606	611	Right-handed alpha
Helix 27	AC9	A	612	617	Right-handed alpha
Helix 28	AD1	A	621	625	Right-handed 310
Helix 29	AD2	A	699	703	Right-handed 310
Helix 30	AD3	A	706	713	Right-handed alpha
Helix 31	AD4	A	734	742	Right-handed alpha
Helix 32	AD5	A	759	767	Right-handed alpha
Helix 33	AD6	A	768	770	Right-handed 310
Helix 34	AD7	A	785	792	Right-handed alpha
Helix 35	AD8	A	793	797	Right-handed 310
Helix 36	AD9	A	813	816	Right-handed 310
Helix 37	AE1	A	817	828	Right-handed alpha
Helix 38	AE2	A	872	876	Right-handed 310
Helix 39	AE3	A	884	892	Right-handed 310
Helix 40	AE4	A	902	905	Right-handed 310
Helix 41	AE5	A	906	911	Right-handed alpha
Helix 42	AE6	A	917	930	Right-handed alpha
Helix 43	AE7	A	931	942	Right-handed alpha
Helix 44	AE8	A	946	957	Right-handed alpha
Helix 45	AE9	A	965	973	Right-handed alpha
Helix 46	AF1	A	995	1008	Right-handed alpha
Helix 47	AF2	A	1019	1021	Right-handed 310
Helix 48	AF3	B	21	46	Right-handed alpha
Helix 49	AF4	B	94	106	Right-handed alpha
Helix 50	AF5	B	109	134	Right-handed alpha
Helix 51	AF6	B	147	169	Right-handed alpha
Helix 52	AF7	B	173	179	Right-handed alpha
Helix 53	AF8	B	180	188	Right-handed alpha
Helix 54	AF9	B	189	200	Right-handed alpha
Helix 55	AG1	B	206	215	Right-handed 310
Helix 56	AG2	B	216	224	Right-handed alpha
Helix 57	AG3	B	229	260	Right-handed alpha
Helix 58	AG4	B	261	265	Right-handed 310
Helix 59	AG5	B	273	286	Right-handed alpha
Helix 60	AG6	B	297	327	Right-handed alpha
Helix 61	AG7	B	352	364	Right-handed alpha
Helix 62	AG8	B	384	394	Right-handed alpha
Helix 63	AG9	B	407	414	Right-handed alpha
Helix 64	AH1	B	432	451	Right-handed alpha
Helix 65	AH2	B	463	472	Right-handed 310
Helix 66	AH3	B	486	500	Right-handed alpha
Helix 67	AH4	B	502	511	Right-handed alpha
Helix 68	AH5	B	523	533	Right-handed alpha
Helix 69	AH6	B	542	546	Right-handed 310
Helix 70	AH7	B	549	560	Right-handed alpha
Helix 71	AH8	B	602	605	Right-handed 310
Helix 72	AH9	B	606	611	Right-handed alpha
Helix 73	AI1	B	612	617	Right-handed alpha
Helix 74	AI2	B	699	703	Right-handed 310
Helix 75	AI3	B	706	713	Right-handed alpha
Helix 76	AI4	B	734	742	Right-handed alpha
Helix 77	AI5	B	759	767	Right-handed alpha
Helix 78	AI6	B	768	770	Right-handed 310
Helix 79	AI7	B	785	792	Right-handed alpha
Helix 80	AI8	B	793	797	Right-handed 310
Helix 81	AI9	B	813	816	Right-handed 310
Helix 82	AJ1	B	817	828	Right-handed alpha
Helix 83	AJ2	B	872	876	Right-handed 310
Helix 84	AJ3	B	884	892	Right-handed 310
Helix 85	AJ4	B	902	905	Right-handed 310
Helix 86	AJ5	B	906	911	Right-handed alpha
Helix 87	AJ6	B	917	930	Right-handed alpha
Helix 88	AJ7	B	931	942	Right-handed alpha
Helix 89	AJ8	B	946	957	Right-handed alpha
Helix 90	AJ9	B	965	973	Right-handed alpha
Helix 91	AK1	B	995	1008	Right-handed alpha
Helix 92	AK2	B	1019	1021	Right-handed 310
Helix 93	AK3	C	21	46	Right-handed alpha
Helix 94	AK4	C	94	106	Right-handed alpha
Helix 95	AK5	C	109	134	Right-handed alpha
Helix 96	AK6	C	147	169	Right-handed alpha
Helix 97	AK7	C	173	179	Right-handed alpha
Helix 98	AK8	C	180	188	Right-handed alpha
Helix 99	AK9	C	189	200	Right-handed alpha
Helix 100	AL1	C	206	215	Right-handed 310
Helix 101	AL2	C	216	224	Right-handed alpha
Helix 102	AL3	C	229	260	Right-handed alpha
Helix 103	AL4	C	261	265	Right-handed 310
Helix 104	AL5	C	273	286	Right-handed alpha
Helix 105	AL6	C	297	327	Right-handed alpha
Helix 106	AL7	C	352	364	Right-handed alpha
Helix 107	AL8	C	384	394	Right-handed alpha
Helix 108	AL9	C	407	414	Right-handed alpha
Helix 109	AM1	C	415	419	Right-handed 310
Helix 110	AM2	C	432	451	Right-handed alpha
Helix 111	AM3	C	463	472	Right-handed 310
Helix 112	AM4	C	476	480	Right-handed 310
Helix 113	AM5	C	486	500	Right-handed alpha
Helix 114	AM6	C	502	511	Right-handed alpha
Helix 115	AM7	C	523	532	Right-handed alpha
Helix 116	AM8	C	542	546	Right-handed 310
Helix 117	AM9	C	549	560	Right-handed alpha
Helix 118	AN1	C	602	605	Right-handed 310
Helix 119	AN2	C	606	611	Right-handed alpha
Helix 120	AN3	C	612	617	Right-handed alpha
Helix 121	AN4	C	621	625	Right-handed 310
Helix 122	AN5	C	699	703	Right-handed 310
Helix 123	AN6	C	706	713	Right-handed alpha
Helix 124	AN7	C	734	742	Right-handed alpha
Helix 125	AN8	C	759	767	Right-handed alpha
Helix 126	AN9	C	768	770	Right-handed 310
Helix 127	AO1	C	785	792	Right-handed alpha
Helix 128	AO2	C	793	797	Right-handed 310
Helix 129	AO3	C	813	816	Right-handed 310
Helix 130	AO4	C	817	828	Right-handed alpha
Helix 131	AO5	C	872	876	Right-handed 310
Helix 132	AO6	C	884	891	Right-handed 310
Helix 133	AO7	C	902	905	Right-handed 310
Helix 134	AO8	C	906	911	Right-handed alpha
Helix 135	AO9	C	917	930	Right-handed alpha
Helix 136	AP1	C	931	942	Right-handed alpha
Helix 137	AP2	C	946	957	Right-handed alpha
Helix 138	AP3	C	965	973	Right-handed alpha
Helix 139	AP4	C	995	1008	Right-handed alpha
Helix 140	AP5	C	1019	1021	Right-handed 310
Helix 141	AP6	D	21	46	Right-handed alpha
Helix 142	AP7	D	94	106	Right-handed alpha
Helix 143	AP8	D	109	134	Right-handed alpha
Helix 144	AP9	D	147	169	Right-handed alpha
Helix 145	AQ1	D	173	179	Right-handed alpha
Helix 146	AQ2	D	180	188	Right-handed alpha
Helix 147	AQ3	D	189	200	Right-handed alpha
Helix 148	AQ4	D	206	215	Right-handed 310
Helix 149	AQ5	D	216	224	Right-handed alpha
Helix 150	AQ6	D	229	260	Right-handed alpha
Helix 151	AQ7	D	261	265	Right-handed 310
Helix 152	AQ8	D	273	286	Right-handed alpha
Helix 153	AQ9	D	297	327	Right-handed alpha
Helix 154	AR1	D	352	364	Right-handed alpha
Helix 155	AR2	D	384	394	Right-handed alpha
Helix 156	AR3	D	407	414	Right-handed alpha
Helix 157	AR4	D	415	419	Right-handed 310
Helix 158	AR5	D	432	451	Right-handed alpha
Helix 159	AR6	D	463	472	Right-handed 310
Helix 160	AR7	D	476	480	Right-handed 310
Helix 161	AR8	D	486	500	Right-handed alpha
Helix 162	AR9	D	502	509	Right-handed alpha
Helix 163	AS1	D	523	532	Right-handed alpha
Helix 164	AS2	D	542	546	Right-handed 310
Helix 165	AS3	D	549	560	Right-handed alpha
Helix 166	AS4	D	602	605	Right-handed 310
Helix 167	AS5	D	606	611	Right-handed alpha
Helix 168	AS6	D	612	617	Right-handed alpha
Helix 169	AS7	D	621	625	Right-handed 310
Helix 170	AS8	D	699	703	Right-handed 310
Helix 171	AS9	D	706	713	Right-handed alpha
Helix 172	AT1	D	734	742	Right-handed alpha
Helix 173	AT2	D	759	767	Right-handed alpha
Helix 174	AT3	D	768	770	Right-handed 310
Helix 175	AT4	D	785	792	Right-handed alpha
Helix 176	AT5	D	793	797	Right-handed 310
Helix 177	AT6	D	813	816	Right-handed 310
Helix 178	AT7	D	817	828	Right-handed alpha
Helix 179	AT8	D	872	876	Right-handed 310
Helix 180	AT9	D	884	892	Right-handed 310
Helix 181	AU1	D	902	905	Right-handed 310
Helix 182	AU2	D	906	911	Right-handed alpha
Helix 183	AU3	D	917	930	Right-handed alpha
Helix 184	AU4	D	931	942	Right-handed alpha
Helix 185	AU5	D	946	957	Right-handed alpha
Helix 186	AU6	D	965	973	Right-handed alpha
Helix 187	AU7	D	995	1008	Right-handed alpha
Helix 188	AU8	D	1019	1021	Right-handed 310

There are 24 sheets in PDB entry 8V63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	141	first strand
Strand 2	A	201	203	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	401	first strand
Strand 2	A	373	378	parallel
Strand 3	A	343	349	parallel
Strand 4	A	421	425	parallel
Strand 5	A	455	460	parallel
Strand 6	A	482	485	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	540	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	564	570	anti-parallel
Strand 4	A	578	581	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	687	first strand
Strand 2	A	961	962	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	780	first strand
Strand 2	A	754	758	parallel
Strand 3	A	719	723	parallel
Strand 4	A	799	803	parallel
Strand 5	A	878	882	parallel
Strand 6	A	914	916	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	975	981	first strand
Strand 2	A	1047	1054	anti-parallel
Strand 3	A	1010	1017	anti-parallel
Strand 4	A	1031	1035	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	201	203	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	401	first strand
Strand 2	B	373	378	parallel
Strand 3	B	343	349	parallel
Strand 4	B	421	425	parallel
Strand 5	B	455	460	parallel
Strand 6	B	482	485	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	540	first strand
Strand 2	B	594	599	anti-parallel
Strand 3	B	564	570	anti-parallel
Strand 4	B	578	581	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	686	687	first strand
Strand 2	B	961	962	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	776	780	first strand
Strand 2	B	754	758	parallel
Strand 3	B	719	723	parallel
Strand 4	B	799	803	parallel
Strand 5	B	878	882	parallel
Strand 6	B	914	916	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	975	981	first strand
Strand 2	B	1047	1054	anti-parallel
Strand 3	B	1010	1017	anti-parallel
Strand 4	B	1031	1035	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	201	203	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	401	first strand
Strand 2	C	373	378	parallel
Strand 3	C	343	349	parallel
Strand 4	C	421	425	parallel
Strand 5	C	455	460	parallel
Strand 6	C	482	485	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	540	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	564	570	anti-parallel
Strand 4	C	578	581	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	686	687	first strand
Strand 2	C	961	962	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	780	first strand
Strand 2	C	754	758	parallel
Strand 3	C	719	723	parallel
Strand 4	C	799	803	parallel
Strand 5	C	878	882	parallel
Strand 6	C	914	916	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	975	981	first strand
Strand 2	C	1047	1054	anti-parallel
Strand 3	C	1010	1017	anti-parallel
Strand 4	C	1031	1035	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	141	first strand
Strand 2	D	201	203	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	401	first strand
Strand 2	D	373	378	parallel
Strand 3	D	343	349	parallel
Strand 4	D	421	425	parallel
Strand 5	D	455	460	parallel
Strand 6	D	482	485	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	540	first strand
Strand 2	D	594	599	anti-parallel
Strand 3	D	564	570	anti-parallel
Strand 4	D	578	581	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	686	687	first strand
Strand 2	D	961	962	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	776	780	first strand
Strand 2	D	754	758	parallel
Strand 3	D	719	724	parallel
Strand 4	D	799	804	parallel
Strand 5	D	878	882	parallel
Strand 6	D	914	916	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	975	981	first strand
Strand 2	D	1047	1054	anti-parallel
Strand 3	D	1010	1017	anti-parallel
Strand 4	D	1031	1035	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V63

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V63