Analysis of interatomic Contacts of Structural Units in PDB entry:
8V69


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V69 entry

There is 1 chain in PDB entry 8V69 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5SER 829
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8V69. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 27Right-handed alpha
Helix 2
AA2
A
41 51Right-handed alpha
Helix 3
AA3
A
60 68Right-handed alpha
Helix 4
AA4
A
89 100Right-handed alpha
Helix 5
AA5
A
161 172Right-handed alpha
Helix 6
AA6
A
249 253Right-handed 310
Helix 7
AA7
A
269 279Right-handed alpha
Helix 8
AA8
A
286 290Right-handed 310
Helix 9
AA9
A
291 300Right-handed alpha
Helix 10
AB1
A
311 315Right-handed 310
Helix 11
AB2
A
320 324Right-handed 310
Helix 12
AB3
A
334 345Right-handed alpha
Helix 13
AB4
A
356 358Right-handed 310
Helix 14
AB5
A
377 384Right-handed 310
Helix 15
AB6
A
402 416Right-handed alpha
Helix 16
AB7
A
446 452Right-handed alpha
Helix 17
AB8
A
452 462Right-handed alpha
Helix 18
AB9
A
480 494Right-handed alpha
Helix 19
AC1
A
505 515Right-handed alpha
Helix 20
AC2
A
524 526Right-handed 310
Helix 21
AC3
A
527 534Right-handed alpha
Helix 22
AC4
A
549 554Right-handed alpha
Helix 23
AC5
A
579 583Right-handed 310
Helix 24
AC6
A
599 610Right-handed alpha
Helix 25
AC7
A
614 619Right-handed alpha
Helix 26
AC8
A
631 635Right-handed 310
Helix 27
AC9
A
659 672Right-handed alpha
Helix 28
AD1
A
680 686Right-handed alpha
Helix 29
AD2
A
699 701Right-handed 310
Helix 30
AD3
A
734 736Right-handed 310
Helix 31
AD4
A
737 753Right-handed alpha
Helix 32
AD5
A
791 798Right-handed alpha
Helix 33
AD6
A
798 807Right-handed alpha
Helix 34
AD7
A
816 822Right-handed alpha
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There are 10 sheets in PDB entry 8V69. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
33 38parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
393 397anti-parallel
Strand 3
A
74 79anti-parallel
Strand 4
A
439 440anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
131 133anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
203 205anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
257 260parallel
Strand 3
A
350 354parallel
Strand 4
A
236 243anti-parallel
Strand 5
A
366 369anti-parallel
Strand 6
A
375 376anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
257 260parallel
Strand 3
A
350 354parallel
Strand 4
A
236 243anti-parallel
Strand 5
A
388 389anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 478first strand
Strand 2
A
498 502parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 523first strand
Strand 2
A
730 733anti-parallel
Strand 3
A
537 543anti-parallel
Strand 4
A
781 784anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
588 590parallel
Strand 3
A
674 678parallel
Strand 4
A
566 572anti-parallel
Strand 5
A
703 706anti-parallel
Strand 6
A
712 714anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
588 590parallel
Strand 3
A
674 678parallel
Strand 4
A
566 572anti-parallel
Strand 5
A
724 725anti-parallel
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