Analysis of interatomic Contacts of Structural Units in PDB entry:
8V6M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V6M entry

There are 4 chains in PDB entry 8V6M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 117	VAL 756
B	ARG 117	VAL 756
C	ARG 117	VAL 756
D	ARG 117	VAL 756

There are116 helices in PDB entry 8V6M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	117	130	Right-handed alpha
Helix 2	AA2	A	131	149	Right-handed alpha
Helix 3	AA3	A	153	161	Right-handed alpha
Helix 4	AA4	A	170	178	Right-handed alpha
Helix 5	AA5	A	183	197	Right-handed alpha
Helix 6	AA6	A	199	206	Right-handed alpha
Helix 7	AA7	A	217	223	Right-handed alpha
Helix 8	AA8	A	227	237	Right-handed alpha
Helix 9	AA9	A	264	272	Right-handed alpha
Helix 10	AB1	A	274	284	Right-handed alpha
Helix 11	AB2	A	298	306	Right-handed alpha
Helix 12	AB3	A	315	329	Right-handed alpha
Helix 13	AB4	A	332	336	Right-handed 310
Helix 14	AB5	A	343	352	Right-handed alpha
Helix 15	AB6	A	353	362	Right-handed alpha
Helix 16	AB7	A	370	374	Right-handed 310
Helix 17	AB8	A	402	410	Right-handed alpha
Helix 18	AB9	A	415	420	Right-handed alpha
Helix 19	AC1	A	425	436	Right-handed alpha
Helix 20	AC2	A	436	460	Right-handed alpha
Helix 21	AC3	A	480	507	Right-handed alpha
Helix 22	AC4	A	520	543	Right-handed alpha
Helix 23	AC5	A	546	563	Right-handed alpha
Helix 24	AC6	A	571	583	Right-handed alpha
Helix 25	AC7	A	586	609	Right-handed alpha
Helix 26	AC8	A	613	617	Right-handed 310
Helix 27	AC9	A	624	638	Right-handed alpha
Helix 28	AD1	A	652	707	Right-handed alpha
Helix 29	AD2	A	708	715	Right-handed alpha
Helix 30	AD3	B	118	130	Right-handed alpha
Helix 31	AD4	B	131	149	Right-handed alpha
Helix 32	AD5	B	153	161	Right-handed alpha
Helix 33	AD6	B	170	178	Right-handed alpha
Helix 34	AD7	B	183	197	Right-handed alpha
Helix 35	AD8	B	199	206	Right-handed alpha
Helix 36	AD9	B	217	223	Right-handed alpha
Helix 37	AE1	B	227	237	Right-handed alpha
Helix 38	AE2	B	264	272	Right-handed alpha
Helix 39	AE3	B	274	284	Right-handed alpha
Helix 40	AE4	B	298	306	Right-handed alpha
Helix 41	AE5	B	315	329	Right-handed alpha
Helix 42	AE6	B	332	336	Right-handed 310
Helix 43	AE7	B	343	352	Right-handed alpha
Helix 44	AE8	B	353	362	Right-handed alpha
Helix 45	AE9	B	370	374	Right-handed 310
Helix 46	AF1	B	402	410	Right-handed alpha
Helix 47	AF2	B	415	420	Right-handed alpha
Helix 48	AF3	B	425	436	Right-handed alpha
Helix 49	AF4	B	436	460	Right-handed alpha
Helix 50	AF5	B	480	507	Right-handed alpha
Helix 51	AF6	B	520	543	Right-handed alpha
Helix 52	AF7	B	546	563	Right-handed alpha
Helix 53	AF8	B	571	583	Right-handed alpha
Helix 54	AF9	B	586	609	Right-handed alpha
Helix 55	AG1	B	613	617	Right-handed 310
Helix 56	AG2	B	624	638	Right-handed alpha
Helix 57	AG3	B	652	707	Right-handed alpha
Helix 58	AG4	B	708	715	Right-handed alpha
Helix 59	AG5	C	118	130	Right-handed alpha
Helix 60	AG6	C	131	149	Right-handed alpha
Helix 61	AG7	C	153	161	Right-handed alpha
Helix 62	AG8	C	170	178	Right-handed alpha
Helix 63	AG9	C	183	197	Right-handed alpha
Helix 64	AH1	C	199	206	Right-handed alpha
Helix 65	AH2	C	217	223	Right-handed alpha
Helix 66	AH3	C	227	237	Right-handed alpha
Helix 67	AH4	C	264	272	Right-handed alpha
Helix 68	AH5	C	274	284	Right-handed alpha
Helix 69	AH6	C	298	306	Right-handed alpha
Helix 70	AH7	C	315	329	Right-handed alpha
Helix 71	AH8	C	332	336	Right-handed 310
Helix 72	AH9	C	343	352	Right-handed alpha
Helix 73	AI1	C	353	362	Right-handed alpha
Helix 74	AI2	C	370	374	Right-handed 310
Helix 75	AI3	C	402	410	Right-handed alpha
Helix 76	AI4	C	415	420	Right-handed alpha
Helix 77	AI5	C	425	436	Right-handed alpha
Helix 78	AI6	C	436	460	Right-handed alpha
Helix 79	AI7	C	480	507	Right-handed alpha
Helix 80	AI8	C	520	543	Right-handed alpha
Helix 81	AI9	C	546	563	Right-handed alpha
Helix 82	AJ1	C	571	583	Right-handed alpha
Helix 83	AJ2	C	586	609	Right-handed alpha
Helix 84	AJ3	C	613	617	Right-handed 310
Helix 85	AJ4	C	624	638	Right-handed alpha
Helix 86	AJ5	C	652	707	Right-handed alpha
Helix 87	AJ6	C	708	715	Right-handed alpha
Helix 88	AJ7	D	118	130	Right-handed alpha
Helix 89	AJ8	D	131	149	Right-handed alpha
Helix 90	AJ9	D	153	161	Right-handed alpha
Helix 91	AK1	D	170	178	Right-handed alpha
Helix 92	AK2	D	183	197	Right-handed alpha
Helix 93	AK3	D	199	206	Right-handed alpha
Helix 94	AK4	D	217	223	Right-handed alpha
Helix 95	AK5	D	227	237	Right-handed alpha
Helix 96	AK6	D	264	272	Right-handed alpha
Helix 97	AK7	D	274	284	Right-handed alpha
Helix 98	AK8	D	298	306	Right-handed alpha
Helix 99	AK9	D	315	329	Right-handed alpha
Helix 100	AL1	D	332	336	Right-handed 310
Helix 101	AL2	D	343	352	Right-handed alpha
Helix 102	AL3	D	353	362	Right-handed alpha
Helix 103	AL4	D	370	374	Right-handed 310
Helix 104	AL5	D	402	410	Right-handed alpha
Helix 105	AL6	D	415	420	Right-handed alpha
Helix 106	AL7	D	425	436	Right-handed alpha
Helix 107	AL8	D	436	460	Right-handed alpha
Helix 108	AL9	D	480	507	Right-handed alpha
Helix 109	AM1	D	520	543	Right-handed alpha
Helix 110	AM2	D	546	563	Right-handed alpha
Helix 111	AM3	D	571	583	Right-handed alpha
Helix 112	AM4	D	586	609	Right-handed alpha
Helix 113	AM5	D	613	617	Right-handed 310
Helix 114	AM6	D	624	638	Right-handed alpha
Helix 115	AM7	D	652	707	Right-handed alpha
Helix 116	AM8	D	708	715	Right-handed alpha

There are 8 sheets in PDB entry 8V6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	382	first strand
Strand 2	A	385	390	anti-parallel
Strand 3	A	732	736	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	721	724	first strand
Strand 2	A	727	729	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	382	first strand
Strand 2	B	385	390	anti-parallel
Strand 3	B	732	736	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	721	724	first strand
Strand 2	B	727	729	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	382	first strand
Strand 2	C	385	390	anti-parallel
Strand 3	C	732	736	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	721	724	first strand
Strand 2	C	727	729	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	382	first strand
Strand 2	D	385	390	anti-parallel
Strand 3	D	732	736	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	721	724	first strand
Strand 2	D	727	729	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V6M

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V6M