Analysis of interatomic Contacts of Structural Units in PDB entry:
8V6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V6Q entry

There are 2 chains in PDB entry 8V6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 65LEU 278
B
 LEU 65ILE 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 8V6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 87Right-handed 310
Helix 2
AA2
A
112 121Right-handed alpha
Helix 3
AA3
A
125 135Right-handed alpha
Helix 4
AA4
A
186 205Right-handed alpha
Helix 5
AA5
A
229 246Right-handed alpha
Helix 6
AA6
A
267 277Right-handed 310
Helix 7
AA7
B
83 87Right-handed 310
Helix 8
AA8
B
112 121Right-handed alpha
Helix 9
AA9
B
125 136Right-handed alpha
Helix 10
AB1
B
186 205Right-handed alpha
Helix 11
AB2
B
229 246Right-handed alpha
Helix 12
AB3
B
259 263Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 8V6Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
253 258parallel
Strand 4
A
209 212parallel
Strand 5
A
90 96parallel
Strand 6
A
169 177parallel
Strand 7
A
163 166anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
253 258parallel
Strand 4
A
209 212parallel
Strand 5
A
90 96parallel
Strand 6
A
169 177parallel
Strand 7
A
183 185anti-parallel
Strand 8
A
221 222parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 146first strand
Strand 2
A
156 158anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
75 81anti-parallel
Strand 3
B
253 258parallel
Strand 4
B
209 212parallel
Strand 5
B
90 96parallel
Strand 6
B
169 177parallel
Strand 7
B
163 166anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
75 81anti-parallel
Strand 3
B
253 258parallel
Strand 4
B
209 212parallel
Strand 5
B
90 96parallel
Strand 6
B
169 177parallel
Strand 7
B
183 185anti-parallel
Strand 8
B
221 222parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 146first strand
Strand 2
B
156 158anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il