Analysis of interatomic Contacts of Structural Units in PDB entry:
8V6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V6T entry

There are 3 chains in PDB entry 8V6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2LEU 169
B
 LYS 6LEU 169
C
 LYS 6LEU 169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8V6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 14Right-handed 310
Helix 2
AA2
A
15 28Right-handed alpha
Helix 3
AA3
A
38 44Right-handed alpha
Helix 4
AA4
A
49 62Right-handed alpha
Helix 5
AA5
A
72 80Right-handed alpha
Helix 6
AA6
A
84 96Right-handed alpha
Helix 7
AA7
A
112 116Right-handed 310
Helix 8
AA8
A
117 124Right-handed alpha
Helix 9
AA9
A
133 143Right-handed alpha
Helix 10
AB1
A
143 148Right-handed alpha
Helix 11
AB2
A
160 167Right-handed alpha
Helix 12
AB3
B
12 14Right-handed 310
Helix 13
AB4
B
15 28Right-handed alpha
Helix 14
AB5
B
38 44Right-handed alpha
Helix 15
AB6
B
45 47Right-handed 310
Helix 16
AB7
B
49 62Right-handed alpha
Helix 17
AB8
B
72 80Right-handed alpha
Helix 18
AB9
B
84 97Right-handed alpha
Helix 19
AC1
B
112 116Right-handed 310
Helix 20
AC2
B
117 123Right-handed alpha
Helix 21
AC3
B
133 143Right-handed alpha
Helix 22
AC4
B
143 148Right-handed alpha
Helix 23
AC5
B
149 151Right-handed 310
Helix 24
AC6
B
160 167Right-handed alpha
Helix 25
AC7
C
12 14Right-handed 310
Helix 26
AC8
C
15 28Right-handed alpha
Helix 27
AC9
C
38 43Right-handed alpha
Helix 28
AD1
C
49 63Right-handed alpha
Helix 29
AD2
C
72 80Right-handed alpha
Helix 30
AD3
C
84 96Right-handed alpha
Helix 31
AD4
C
112 116Right-handed 310
Helix 32
AD5
C
117 123Right-handed alpha
Helix 33
AD6
C
133 144Right-handed alpha
Helix 34
AD7
C
160 167Right-handed alpha
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There are 3 sheets in PDB entry 8V6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
7 10parallel
Strand 3
A
66 71parallel
Strand 4
A
100 104parallel
Strand 5
A
127 131parallel
Strand 6
A
156 158parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 10first strand
Strand 2
B
66 71parallel
Strand 3
B
100 104parallel
Strand 4
B
127 131parallel
Strand 5
B
156 158parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 10first strand
Strand 2
C
66 71parallel
Strand 3
C
100 104parallel
Strand 4
C
127 131parallel
Strand 5
C
156 158parallel
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