Analysis of interatomic Contacts of Structural Units in PDB entry:
8V6V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V6V entry

There are 12 chains in PDB entry 8V6V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 39	GLU 133
B	ALA 15	GLY 102
C	ARG 11	LYS 118
D	ARG 27	LYS 122
E	HIS 39	GLU 133
F	ALA 15	GLY 102
G	ARG 11	LYS 119
H	ARG 27	LYS 122
I	A 61	G 207
J	C 1	T 147
W	TYR 174	GLN 634
X	TYR 174	GLN 634

There are 86 helices in PDB entry 8V6V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	79	Right-handed alpha
Helix 3	AA3	A	85	113	Right-handed alpha
Helix 4	AA4	A	120	131	Right-handed alpha
Helix 5	AA5	B	15	19	Right-handed 310
Helix 6	AA6	B	24	29	Right-handed 310
Helix 7	AA7	B	30	41	Right-handed alpha
Helix 8	AA8	B	49	76	Right-handed alpha
Helix 9	AA9	B	82	93	Right-handed alpha
Helix 10	AB1	C	16	22	Right-handed alpha
Helix 11	AB2	C	26	37	Right-handed alpha
Helix 12	AB3	C	46	73	Right-handed alpha
Helix 13	AB4	C	79	90	Right-handed alpha
Helix 14	AB5	C	90	97	Right-handed alpha
Helix 15	AB6	C	112	116	Right-handed 310
Helix 16	AB7	D	34	46	Right-handed alpha
Helix 17	AB8	D	52	81	Right-handed alpha
Helix 18	AB9	D	87	99	Right-handed alpha
Helix 19	AC1	D	100	120	Right-handed alpha
Helix 20	AC2	E	44	55	Right-handed alpha
Helix 21	AC3	E	63	76	Right-handed alpha
Helix 22	AC4	E	85	114	Right-handed alpha
Helix 23	AC5	E	120	132	Right-handed alpha
Helix 24	AC6	F	24	29	Right-handed 310
Helix 25	AC7	F	30	41	Right-handed alpha
Helix 26	AC8	F	49	76	Right-handed alpha
Helix 27	AC9	F	82	93	Right-handed alpha
Helix 28	AD1	G	16	22	Right-handed alpha
Helix 29	AD2	G	26	37	Right-handed alpha
Helix 30	AD3	G	46	73	Right-handed alpha
Helix 31	AD4	G	79	90	Right-handed alpha
Helix 32	AD5	G	92	97	Right-handed alpha
Helix 33	AD6	H	34	46	Right-handed alpha
Helix 34	AD7	H	52	81	Right-handed alpha
Helix 35	AD8	H	87	99	Right-handed alpha
Helix 36	AD9	H	100	122	Right-handed alpha
Helix 37	AE1	W	181	198	Right-handed alpha
Helix 38	AE2	W	210	225	Right-handed alpha
Helix 39	AE3	W	237	239	Right-handed 310
Helix 40	AE4	W	240	252	Right-handed alpha
Helix 41	AE5	W	263	274	Right-handed alpha
Helix 42	AE6	W	287	293	Right-handed alpha
Helix 43	AE7	W	293	298	Right-handed alpha
Helix 44	AE8	W	310	314	Right-handed 310
Helix 45	AE9	W	318	325	Right-handed alpha
Helix 46	AF1	W	344	355	Right-handed alpha
Helix 47	AF2	W	361	369	Right-handed alpha
Helix 48	AF3	W	387	391	Right-handed alpha
Helix 49	AF4	W	396	401	Right-handed alpha
Helix 50	AF5	W	417	430	Right-handed alpha
Helix 51	AF6	W	438	442	Right-handed 310
Helix 52	AF7	W	448	459	Right-handed alpha
Helix 53	AF8	W	460	463	Right-handed 310
Helix 54	AF9	W	475	481	Right-handed alpha
Helix 55	AG1	W	482	489	Right-handed alpha
Helix 56	AG2	W	490	497	Right-handed alpha
Helix 57	AG3	W	508	523	Right-handed alpha
Helix 58	AG4	W	534	547	Right-handed alpha
Helix 59	AG5	W	559	563	Right-handed alpha
Helix 60	AG6	W	582	592	Right-handed alpha
Helix 61	AG7	W	612	629	Right-handed alpha
Helix 62	AG8	X	181	198	Right-handed alpha
Helix 63	AG9	X	210	225	Right-handed alpha
Helix 64	AH1	X	237	239	Right-handed 310
Helix 65	AH2	X	240	252	Right-handed alpha
Helix 66	AH3	X	263	274	Right-handed alpha
Helix 67	AH4	X	287	293	Right-handed alpha
Helix 68	AH5	X	293	298	Right-handed alpha
Helix 69	AH6	X	310	314	Right-handed 310
Helix 70	AH7	X	318	325	Right-handed alpha
Helix 71	AH8	X	343	355	Right-handed alpha
Helix 72	AH9	X	361	369	Right-handed alpha
Helix 73	AI1	X	387	391	Right-handed alpha
Helix 74	AI2	X	396	401	Right-handed alpha
Helix 75	AI3	X	417	430	Right-handed alpha
Helix 76	AI4	X	438	442	Right-handed 310
Helix 77	AI5	X	448	459	Right-handed alpha
Helix 78	AI6	X	460	463	Right-handed 310
Helix 79	AI7	X	475	481	Right-handed alpha
Helix 80	AI8	X	482	489	Right-handed alpha
Helix 81	AI9	X	490	497	Right-handed alpha
Helix 82	AJ1	X	508	523	Right-handed alpha
Helix 83	AJ2	X	534	547	Right-handed alpha
Helix 84	AJ3	X	559	563	Right-handed alpha
Helix 85	AJ4	X	582	592	Right-handed alpha
Helix 86	AJ5	X	612	629	Right-handed alpha

There are 14 sheets in PDB entry 8V6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	257	260	first strand
Strand 2	W	282	286	parallel
Strand 3	W	232	236	parallel
Strand 4	W	304	308	parallel
Strand 5	W	332	335	parallel
Strand 6	W	202	203	parallel
Strand 7	W	392	393	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	408	414	first strand
Strand 2	W	603	609	parallel
Strand 3	W	573	576	parallel
Strand 4	W	502	506	parallel
Strand 5	W	554	558	parallel
Strand 6	W	526	529	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	257	260	first strand
Strand 2	X	282	286	parallel
Strand 3	X	232	236	parallel
Strand 4	X	304	308	parallel
Strand 5	X	332	335	parallel
Strand 6	X	202	203	parallel
Strand 7	X	392	393	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	408	414	first strand
Strand 2	X	603	609	parallel
Strand 3	X	573	576	parallel
Strand 4	X	502	506	parallel
Strand 5	X	554	558	parallel
Strand 6	X	526	529	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V6V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V6V