Analysis of interatomic Contacts of Structural Units in PDB entry:
8V7O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V7O entry

There are 9 chains in PDB entry 8V7O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	GLU 491
B	ASP 1	GLU 491
C	ASP 1	GLU 491
H	GLN 1	VAL 126
I	GLN 1	VAL 126
J	GLN 1	VAL 126
L	GLU 1	LYS 127
M	GLU 1	LYS 127
N	GLU 1	LYS 127

There are 33 helices in PDB entry 8V7O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	62	Right-handed alpha
Helix 2	AA2	A	67	71	Right-handed 310
Helix 3	AA3	A	97	105	Right-handed alpha
Helix 4	AA4	A	106	108	Right-handed 310
Helix 5	AA5	A	183	192	Right-handed alpha
Helix 6	AA6	A	364	384	Right-handed alpha
Helix 7	AA7	A	400	451	Right-handed alpha
Helix 8	AA8	A	471	481	Right-handed alpha
Helix 9	AA9	A	485	489	Right-handed 310
Helix 10	AB1	B	56	62	Right-handed alpha
Helix 11	AB2	B	67	71	Right-handed 310
Helix 12	AB3	B	97	105	Right-handed alpha
Helix 13	AB4	B	106	108	Right-handed 310
Helix 14	AB5	B	183	192	Right-handed alpha
Helix 15	AB6	B	364	384	Right-handed alpha
Helix 16	AB7	B	400	451	Right-handed alpha
Helix 17	AB8	B	471	481	Right-handed alpha
Helix 18	AB9	B	485	489	Right-handed 310
Helix 19	AC1	C	56	62	Right-handed alpha
Helix 20	AC2	C	67	71	Right-handed 310
Helix 21	AC3	C	97	105	Right-handed alpha
Helix 22	AC4	C	106	108	Right-handed 310
Helix 23	AC5	C	183	192	Right-handed alpha
Helix 24	AC6	C	364	384	Right-handed alpha
Helix 25	AC7	C	400	451	Right-handed alpha
Helix 26	AC8	C	471	481	Right-handed alpha
Helix 27	AC9	C	485	489	Right-handed 310
Helix 28	AD1	H	69	72	Right-handed 310
Helix 29	AD2	I	69	72	Right-handed 310
Helix 30	AD3	J	69	72	Right-handed 310
Helix 31	AD4	L	95	99	Right-handed 310
Helix 32	AD5	M	95	99	Right-handed 310
Helix 33	AD6	N	95	99	Right-handed 310

There are 45 sheets in PDB entry 8V7O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	353	first strand
Strand 2	A	2	7	anti-parallel
Strand 3	A	464	465	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	18	first strand
Strand 2	A	21	26	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	291	292	parallel
Strand 3	A	304	305	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	252	255	anti-parallel
Strand 3	A	172	180	anti-parallel
Strand 4	A	225	233	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	137	first strand
Strand 2	A	140	142	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	249	250	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	161	first strand
Strand 2	A	238	243	anti-parallel
Strand 3	A	164	165	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	161	first strand
Strand 2	A	238	243	anti-parallel
Strand 3	A	198	201	anti-parallel
Strand 4	A	206	209	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	283	285	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	353	first strand
Strand 2	B	2	7	anti-parallel
Strand 3	B	464	465	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	18	first strand
Strand 2	B	21	26	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	291	292	parallel
Strand 3	B	304	305	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	115	first strand
Strand 2	B	252	255	anti-parallel
Strand 3	B	172	180	anti-parallel
Strand 4	B	225	233	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	137	first strand
Strand 2	B	140	142	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	249	250	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	238	243	anti-parallel
Strand 3	B	164	165	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	238	243	anti-parallel
Strand 3	B	198	201	anti-parallel
Strand 4	B	206	209	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	280	first strand
Strand 2	B	283	285	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	353	first strand
Strand 2	C	2	7	anti-parallel
Strand 3	C	464	465	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	18	first strand
Strand 2	C	21	26	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	291	292	parallel
Strand 3	C	304	305	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	115	first strand
Strand 2	C	252	255	anti-parallel
Strand 3	C	172	180	anti-parallel
Strand 4	C	225	233	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	137	first strand
Strand 2	C	140	142	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	148	first strand
Strand 2	C	249	250	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	161	first strand
Strand 2	C	238	243	anti-parallel
Strand 3	C	164	165	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	161	first strand
Strand 2	C	238	243	anti-parallel
Strand 3	C	198	201	anti-parallel
Strand 4	C	206	209	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	280	first strand
Strand 2	C	283	285	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	86	94	anti-parallel
Strand 4	H	76	80	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	67	first strand
Strand 2	H	51	56	anti-parallel
Strand 3	H	38	44	anti-parallel
Strand 4	H	100	110	anti-parallel
Strand 5	H	113	118	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	67	first strand
Strand 2	H	51	56	anti-parallel
Strand 3	H	38	44	anti-parallel
Strand 4	H	100	110	anti-parallel
Strand 5	H	122	124	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	6	first strand
Strand 2	I	17	25	anti-parallel
Strand 3	I	86	94	anti-parallel
Strand 4	I	76	80	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	65	67	first strand
Strand 2	I	51	56	anti-parallel
Strand 3	I	38	44	anti-parallel
Strand 4	I	100	110	anti-parallel
Strand 5	I	113	118	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	65	67	first strand
Strand 2	I	51	56	anti-parallel
Strand 3	I	38	44	anti-parallel
Strand 4	I	100	110	anti-parallel
Strand 5	I	122	124	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	6	first strand
Strand 2	J	17	25	anti-parallel
Strand 3	J	86	94	anti-parallel
Strand 4	J	76	80	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	67	first strand
Strand 2	J	51	56	anti-parallel
Strand 3	J	38	44	anti-parallel
Strand 4	J	100	110	anti-parallel
Strand 5	J	113	118	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	67	first strand
Strand 2	J	51	56	anti-parallel
Strand 3	J	38	44	anti-parallel
Strand 4	J	100	110	anti-parallel
Strand 5	J	122	124	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	87	91	anti-parallel
Strand 4	L	76	79	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	122	125	parallel
Strand 3	L	101	102	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	66	67	first strand
Strand 2	L	51	55	anti-parallel
Strand 3	L	39	43	anti-parallel
Strand 4	L	105	107	anti-parallel
Strand 5	L	116	118	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	87	91	anti-parallel
Strand 4	M	76	79	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	122	125	parallel
Strand 3	M	101	102	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	66	67	first strand
Strand 2	M	51	55	anti-parallel
Strand 3	M	39	43	anti-parallel
Strand 4	M	105	107	anti-parallel
Strand 5	M	116	118	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	87	91	anti-parallel
Strand 4	N	76	79	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	122	125	parallel
Strand 3	N	101	102	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	66	67	first strand
Strand 2	N	51	55	anti-parallel
Strand 3	N	39	43	anti-parallel
Strand 4	N	105	107	anti-parallel
Strand 5	N	116	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V7O

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V7O