Analysis of interatomic Contacts of Structural Units in PDB entry:
8V81


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V81 entry

There is 1 chain in PDB entry 8V81 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3ALA 1440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8V81. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 17Right-handed alpha
Helix 2
AA2
A
20 30Right-handed alpha
Helix 3
AA3
A
45 50Right-handed alpha
Helix 4
AA4
A
50 64Right-handed alpha
Helix 5
AA5
A
69 75Right-handed alpha
Helix 6
AA6
A
78 94Right-handed alpha
Helix 7
AA7
A
97 107Right-handed alpha
Helix 8
AA8
A
119 165Right-handed alpha
Helix 9
AA9
A
170 174Right-handed 310
Helix 10
AB1
A
178 187Right-handed alpha
Helix 11
AB2
A
196 202Right-handed 310
Helix 12
AB3
A
203 217Right-handed alpha
Helix 13
AB4
A
224 247Right-handed alpha
Helix 14
AB5
A
250 268Right-handed alpha
Helix 15
AB6
A
268 276Right-handed alpha
Helix 16
AB7
A
277 308Right-handed alpha
Helix 17
AB8
A
315 330Right-handed alpha
Helix 18
AB9
A
334 352Right-handed alpha
Helix 19
AC1
A
353 376Right-handed alpha
Helix 20
AC2
A
463 473Right-handed alpha
Helix 21
AC3
A
501 508Right-handed alpha
Helix 22
AC4
A
515 524Right-handed alpha
Helix 23
AC5
A
526 533Right-handed alpha
Helix 24
AC6
A
549 564Right-handed alpha
Helix 25
AC7
A
579 591Right-handed alpha
Helix 26
AC8
A
607 612Right-handed alpha
Helix 27
AC9
A
629 637Right-handed alpha
Helix 28
AD1
A
848 854Right-handed alpha
Helix 29
AD2
A
856 876Right-handed alpha
Helix 30
AD3
A
879 883Right-handed 310
Helix 31
AD4
A
916 922Right-handed alpha
Helix 32
AD5
A
922 927Right-handed alpha
Helix 33
AD6
A
934 958Right-handed alpha
Helix 34
AD7
A
960 967Right-handed alpha
Helix 35
AD8
A
972 977Right-handed alpha
Helix 36
AD9
A
978 986Right-handed alpha
Helix 37
AE1
A
986 1012Right-handed alpha
Helix 38
AE2
A
1018 1047Right-handed alpha
Helix 39
AE3
A
1048 1061Right-handed alpha
Helix 40
AE4
A
1061 1067Right-handed alpha
Helix 41
AE5
A
1070 1120Right-handed alpha
Helix 42
AE6
A
1131 1168Right-handed alpha
Helix 43
AE7
A
1249 1259Right-handed alpha
Helix 44
AE8
A
1278 1284Right-handed alpha
Helix 45
AE9
A
1299 1305Right-handed alpha
Helix 46
AF1
A
1311 1323Right-handed alpha
Helix 47
AF2
A
1324 1329Right-handed alpha
Helix 48
AF3
A
1347 1362Right-handed alpha
Helix 49
AF4
A
1380 1392Right-handed alpha
Helix 50
AF5
A
1435 1440Right-handed alpha
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There are 4 sheets in PDB entry 8V81. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 448first strand
Strand 2
A
392 399anti-parallel
Strand 3
A
479 483anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
568 571parallel
Strand 3
A
600 603parallel
Strand 4
A
453 458parallel
Strand 5
A
615 619parallel
Strand 6
A
624 628anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1227 1234first strand
Strand 2
A
1210 1217anti-parallel
Strand 3
A
1266 1267anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1286 1289first strand
Strand 2
A
1366 1369parallel
Strand 3
A
1396 1399parallel
Strand 4
A
1240 1244parallel
Strand 5
A
1413 1416parallel
Strand 6
A
1421 1424anti-parallel
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