Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V8B entry

There is 1 chain in PDB entry 8V8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8V8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
15 22Right-handed alpha
Helix 3
AA3
A
34 41Right-handed alpha
Helix 4
AA4
A
42 68Right-handed alpha
Helix 5
AA5
A
71 76Right-handed alpha
Helix 6
AA6
A
93 108Right-handed alpha
Helix 7
AA7
A
117 132Right-handed alpha
Helix 8
AA8
A
132 148Right-handed alpha
Helix 9
AA9
A
223 225Right-handed 310
Helix 10
AB1
A
258 260Right-handed 310
Helix 11
AB2
A
261 284Right-handed alpha
Helix 12
AB3
A
296 307Right-handed alpha
Helix 13
AB4
A
338 341Right-handed 310
Helix 14
AB5
A
342 358Right-handed alpha
Helix 15
AB6
A
373 411Right-handed alpha
Helix 16
AB7
A
420 424Right-handed 310
Helix 17
AB8
A
435 446Right-handed alpha
Helix 18
AB9
A
451 459Right-handed alpha
Helix 19
AC1
A
464 475Right-handed alpha
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There are 5 sheets in PDB entry 8V8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
172 177parallel
Strand 3
A
184 192anti-parallel
Strand 4
A
204 210anti-parallel
Strand 5
A
214 221anti-parallel
Strand 6
A
229 237anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
425 427anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 167first strand
Strand 2
A
149 156anti-parallel
Strand 3
A
245 249anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 291first strand
Strand 2
A
328 333anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
323 325anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il