Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V8C entry

There are 5 chains in PDB entry 8V8C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	PHE 478
B	GLU 1	PHE 478
C	GLU 1	PHE 478
D	GLU 1	PHE 478
E	GLU 1	PHE 478

There are 57 helices in PDB entry 8V8C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	10	Right-handed alpha
Helix 2	AA2	A	67	71	Right-handed 310
Helix 3	AA3	A	207	214	Right-handed alpha
Helix 4	AA4	A	214	227	Right-handed alpha
Helix 5	AA5	A	237	260	Right-handed alpha
Helix 6	AA6	A	268	296	Right-handed alpha
Helix 7	AA7	A	305	314	Right-handed alpha
Helix 8	AA8	A	314	320	Right-handed alpha
Helix 9	AA9	A	429	466	Right-handed alpha
Helix 10	AB1	A	469	478	Right-handed alpha
Helix 11	AB2	B	2	11	Right-handed alpha
Helix 12	AB3	B	207	214	Right-handed alpha
Helix 13	AB4	B	214	227	Right-handed alpha
Helix 14	AB5	B	228	231	Right-handed 310
Helix 15	AB6	B	232	236	Right-handed 310
Helix 16	AB7	B	237	260	Right-handed alpha
Helix 17	AB8	B	268	296	Right-handed alpha
Helix 18	AB9	B	305	312	Right-handed alpha
Helix 19	AC1	B	314	320	Right-handed alpha
Helix 20	AC2	B	426	465	Right-handed alpha
Helix 21	AC3	B	469	478	Right-handed alpha
Helix 22	AC4	C	2	11	Right-handed alpha
Helix 23	AC5	C	207	214	Right-handed alpha
Helix 24	AC6	C	214	227	Right-handed alpha
Helix 25	AC7	C	228	230	Right-handed 310
Helix 26	AC8	C	232	236	Right-handed 310
Helix 27	AC9	C	237	258	Right-handed alpha
Helix 28	AD1	C	268	296	Right-handed alpha
Helix 29	AD2	C	305	312	Right-handed alpha
Helix 30	AD3	C	314	320	Right-handed alpha
Helix 31	AD4	C	426	466	Right-handed alpha
Helix 32	AD5	C	469	478	Right-handed alpha
Helix 33	AD6	D	2	11	Right-handed alpha
Helix 34	AD7	D	67	71	Right-handed 310
Helix 35	AD8	D	207	214	Right-handed alpha
Helix 36	AD9	D	214	227	Right-handed alpha
Helix 37	AE1	D	228	231	Right-handed 310
Helix 38	AE2	D	232	236	Right-handed 310
Helix 39	AE3	D	237	248	Right-handed alpha
Helix 40	AE4	D	249	258	Right-handed alpha
Helix 41	AE5	D	268	296	Right-handed alpha
Helix 42	AE6	D	307	312	Right-handed alpha
Helix 43	AE7	D	314	321	Right-handed alpha
Helix 44	AE8	D	425	466	Right-handed alpha
Helix 45	AE9	D	469	478	Right-handed alpha
Helix 46	AF1	E	2	11	Right-handed alpha
Helix 47	AF2	E	207	214	Right-handed alpha
Helix 48	AF3	E	214	227	Right-handed alpha
Helix 49	AF4	E	228	231	Right-handed 310
Helix 50	AF5	E	232	236	Right-handed 310
Helix 51	AF6	E	237	250	Right-handed alpha
Helix 52	AF7	E	250	258	Right-handed alpha
Helix 53	AF8	E	268	296	Right-handed alpha
Helix 54	AF9	E	305	312	Right-handed alpha
Helix 55	AG1	E	314	320	Right-handed alpha
Helix 56	AG2	E	426	465	Right-handed alpha
Helix 57	AG3	E	469	478	Right-handed alpha

There are 20 sheets in PDB entry 8V8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	79	first strand
Strand 2	A	107	110	anti-parallel
Strand 3	A	114	117	anti-parallel
Strand 4	A	48	60	anti-parallel
Strand 5	A	120	126	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	79	first strand
Strand 2	A	107	110	anti-parallel
Strand 3	A	114	117	anti-parallel
Strand 4	A	48	60	anti-parallel
Strand 5	A	28	43	anti-parallel
Strand 6	A	155	159	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	138	147	anti-parallel
Strand 3	A	194	205	anti-parallel
Strand 4	A	173	177	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	138	147	anti-parallel
Strand 3	A	194	205	anti-parallel
Strand 4	A	180	185	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	79	first strand
Strand 2	B	107	110	anti-parallel
Strand 3	B	112	117	anti-parallel
Strand 4	B	48	65	anti-parallel
Strand 5	B	120	126	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	79	first strand
Strand 2	B	107	110	anti-parallel
Strand 3	B	112	117	anti-parallel
Strand 4	B	48	65	anti-parallel
Strand 5	B	28	43	anti-parallel
Strand 6	B	155	159	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	138	147	anti-parallel
Strand 3	B	194	205	anti-parallel
Strand 4	B	173	177	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	138	147	anti-parallel
Strand 3	B	194	205	anti-parallel
Strand 4	B	180	185	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	79	first strand
Strand 2	C	107	110	anti-parallel
Strand 3	C	114	117	anti-parallel
Strand 4	C	48	60	anti-parallel
Strand 5	C	120	126	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	79	first strand
Strand 2	C	107	110	anti-parallel
Strand 3	C	114	117	anti-parallel
Strand 4	C	48	60	anti-parallel
Strand 5	C	28	43	anti-parallel
Strand 6	C	155	159	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	138	147	anti-parallel
Strand 3	C	194	205	anti-parallel
Strand 4	C	173	177	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	138	147	anti-parallel
Strand 3	C	194	205	anti-parallel
Strand 4	C	180	185	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	79	first strand
Strand 2	D	107	110	anti-parallel
Strand 3	D	114	117	anti-parallel
Strand 4	D	48	60	anti-parallel
Strand 5	D	120	126	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	79	first strand
Strand 2	D	107	110	anti-parallel
Strand 3	D	114	117	anti-parallel
Strand 4	D	48	60	anti-parallel
Strand 5	D	28	43	anti-parallel
Strand 6	D	155	159	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	138	147	anti-parallel
Strand 3	D	194	205	anti-parallel
Strand 4	D	173	177	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	138	147	anti-parallel
Strand 3	D	194	205	anti-parallel
Strand 4	D	180	185	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	79	first strand
Strand 2	E	107	110	anti-parallel
Strand 3	E	114	117	anti-parallel
Strand 4	E	48	60	anti-parallel
Strand 5	E	120	126	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	79	first strand
Strand 2	E	107	110	anti-parallel
Strand 3	E	114	117	anti-parallel
Strand 4	E	48	60	anti-parallel
Strand 5	E	28	43	anti-parallel
Strand 6	E	155	159	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	91	first strand
Strand 2	E	138	147	anti-parallel
Strand 3	E	194	205	anti-parallel
Strand 4	E	173	177	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	91	first strand
Strand 2	E	138	147	anti-parallel
Strand 3	E	194	205	anti-parallel
Strand 4	E	180	185	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V8C

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8C