Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V8F entry

There are 8 chains in PDB entry 8V8F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 1	ARG 252
A	GLU 1	LYS 251
C	GLU 1	LYS 251
D	ALA 0	ARG 252
E	MET -2	LYS 7
F	MET 0	LYS 9
G	MET 0	LYS 9
H	MET -4	LYS 5

There are 12 helices in PDB entry 8V8F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	28	32	Right-handed 310
Helix 2	AA2	B	87	91	Right-handed 310
Helix 3	AA3	B	223	227	Right-handed 310
Helix 4	AA4	A	28	32	Right-handed 310
Helix 5	AA5	A	87	91	Right-handed 310
Helix 6	AA6	A	223	227	Right-handed 310
Helix 7	AA7	C	28	32	Right-handed 310
Helix 8	AA8	C	87	91	Right-handed 310
Helix 9	AA9	C	223	227	Right-handed 310
Helix 10	AB1	D	28	32	Right-handed 310
Helix 11	AB2	D	87	91	Right-handed 310
Helix 12	AB3	D	223	227	Right-handed 310

There are 28 sheets in PDB entry 8V8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	119	123	parallel
Strand 3	B	92	103	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	119	123	parallel
Strand 3	B	92	103	anti-parallel
Strand 4	B	107	115	anti-parallel
Strand 5	E	4	6	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	147	first strand
Strand 2	B	159	165	anti-parallel
Strand 3	B	214	219	anti-parallel
Strand 4	B	206	211	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	246	250	parallel
Strand 3	B	228	234	anti-parallel
Strand 4	B	177	182	anti-parallel
Strand 5	B	189	193	anti-parallel
Strand 6	B	197	198	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	246	250	parallel
Strand 3	B	228	234	anti-parallel
Strand 4	B	241	242	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	174	175	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	119	123	parallel
Strand 3	A	92	103	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	119	123	parallel
Strand 3	A	92	103	anti-parallel
Strand 4	A	107	115	anti-parallel
Strand 5	H	2	4	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	147	first strand
Strand 2	A	159	165	anti-parallel
Strand 3	A	214	219	anti-parallel
Strand 4	A	206	211	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	153	first strand
Strand 2	A	246	250	parallel
Strand 3	A	229	234	anti-parallel
Strand 4	A	177	182	anti-parallel
Strand 5	A	189	193	anti-parallel
Strand 6	A	197	198	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	153	first strand
Strand 2	A	246	250	parallel
Strand 3	A	229	234	anti-parallel
Strand 4	A	241	242	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	174	175	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	119	123	parallel
Strand 3	C	92	103	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	119	123	parallel
Strand 3	C	92	103	anti-parallel
Strand 4	C	107	115	anti-parallel
Strand 5	F	6	8	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	147	first strand
Strand 2	C	159	165	anti-parallel
Strand 3	C	214	219	anti-parallel
Strand 4	C	206	211	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	246	250	parallel
Strand 3	C	229	234	anti-parallel
Strand 4	C	177	182	anti-parallel
Strand 5	C	189	193	anti-parallel
Strand 6	C	197	198	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	246	250	parallel
Strand 3	C	229	234	anti-parallel
Strand 4	C	241	242	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	174	175	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	119	123	parallel
Strand 3	D	92	103	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	119	123	parallel
Strand 3	D	92	103	anti-parallel
Strand 4	D	107	115	anti-parallel
Strand 5	G	6	8	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	147	first strand
Strand 2	D	159	165	anti-parallel
Strand 3	D	214	219	anti-parallel
Strand 4	D	206	211	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	153	first strand
Strand 2	D	246	250	parallel
Strand 3	D	228	234	anti-parallel
Strand 4	D	177	182	anti-parallel
Strand 5	D	189	193	anti-parallel
Strand 6	D	197	198	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	153	first strand
Strand 2	D	246	250	parallel
Strand 3	D	228	234	anti-parallel
Strand 4	D	241	242	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	171	first strand
Strand 2	D	174	175	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V8F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8F