Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V8H entry

There are 2 chains in PDB entry 8V8H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	GLN 1064
B	MET 326	ARG 542

There are 97 helices in PDB entry 8V8H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	53	Right-handed alpha
Helix 2	AA2	A	54	56	Right-handed 310
Helix 3	AA3	A	64	68	Right-handed 310
Helix 4	AA4	A	89	93	Right-handed 310
Helix 5	AA5	A	107	122	Right-handed alpha
Helix 6	AA6	A	125	131	Right-handed alpha
Helix 7	AA7	A	133	143	Right-handed alpha
Helix 8	AA8	A	143	157	Right-handed alpha
Helix 9	AA9	A	159	167	Right-handed alpha
Helix 10	AB1	A	178	183	Right-handed alpha
Helix 11	AB2	A	216	229	Right-handed alpha
Helix 12	AB3	A	235	247	Right-handed alpha
Helix 13	AB4	A	270	280	Right-handed alpha
Helix 14	AB5	A	290	295	Right-handed alpha
Helix 15	AB6	A	328	330	Right-handed 310
Helix 16	AB7	A	488	497	Right-handed alpha
Helix 17	AB8	A	527	535	Right-handed alpha
Helix 18	AB9	A	544	554	Right-handed alpha
Helix 19	AC1	A	554	559	Right-handed alpha
Helix 20	AC2	A	560	563	Right-handed 310
Helix 21	AC3	A	564	571	Right-handed alpha
Helix 22	AC4	A	576	589	Right-handed alpha
Helix 23	AC5	A	594	599	Right-handed alpha
Helix 24	AC6	A	600	603	Right-handed 310
Helix 25	AC7	A	608	623	Right-handed alpha
Helix 26	AC8	A	624	631	Right-handed alpha
Helix 27	AC9	A	631	639	Right-handed alpha
Helix 28	AD1	A	640	642	Right-handed 310
Helix 29	AD2	A	647	660	Right-handed alpha
Helix 30	AD3	A	660	673	Right-handed alpha
Helix 31	AD4	A	677	693	Right-handed alpha
Helix 32	AD5	A	697	721	Right-handed alpha
Helix 33	AD6	A	727	741	Right-handed alpha
Helix 34	AD7	A	741	748	Right-handed alpha
Helix 35	AD8	A	789	793	Right-handed 310
Helix 36	AD9	A	807	827	Right-handed alpha
Helix 37	AE1	A	857	864	Right-handed alpha
Helix 38	AE2	A	875	885	Right-handed alpha
Helix 39	AE3	A	888	911	Right-handed alpha
Helix 40	AE4	A	956	964	Right-handed alpha
Helix 41	AE5	A	974	1005	Right-handed alpha
Helix 42	AE6	A	1015	1027	Right-handed alpha
Helix 43	AE7	A	1031	1053	Right-handed alpha
Helix 44	AE8	B	340	345	Right-handed alpha
Helix 45	AE9	B	401	410	Right-handed alpha
Helix 46	AF1	B	447	505	Right-handed alpha
Helix 47	AF2	B	508	513	Right-handed alpha
Helix 48	AF3	B	517	577	Right-handed alpha
Helix 49	AF4	C	41	53	Right-handed alpha
Helix 50	AF5	C	64	68	Right-handed 310
Helix 51	AF6	C	89	93	Right-handed 310
Helix 52	AF7	C	107	122	Right-handed alpha
Helix 53	AF8	C	125	131	Right-handed alpha
Helix 54	AF9	C	133	143	Right-handed alpha
Helix 55	AG1	C	143	156	Right-handed alpha
Helix 56	AG2	C	159	167	Right-handed alpha
Helix 57	AG3	C	178	183	Right-handed alpha
Helix 58	AG4	C	184	187	Right-handed 310
Helix 59	AG5	C	216	229	Right-handed alpha
Helix 60	AG6	C	235	247	Right-handed alpha
Helix 61	AG7	C	270	279	Right-handed alpha
Helix 62	AG8	C	290	295	Right-handed alpha
Helix 63	AG9	C	328	330	Right-handed 310
Helix 64	AH1	C	488	497	Right-handed alpha
Helix 65	AH2	C	527	535	Right-handed alpha
Helix 66	AH3	C	544	554	Right-handed alpha
Helix 67	AH4	C	554	559	Right-handed alpha
Helix 68	AH5	C	560	563	Right-handed 310
Helix 69	AH6	C	564	571	Right-handed alpha
Helix 70	AH7	C	576	589	Right-handed alpha
Helix 71	AH8	C	594	599	Right-handed alpha
Helix 72	AH9	C	600	603	Right-handed 310
Helix 73	AI1	C	608	623	Right-handed alpha
Helix 74	AI2	C	624	631	Right-handed alpha
Helix 75	AI3	C	631	639	Right-handed alpha
Helix 76	AI4	C	647	660	Right-handed alpha
Helix 77	AI5	C	660	673	Right-handed alpha
Helix 78	AI6	C	677	695	Right-handed alpha
Helix 79	AI7	C	697	721	Right-handed alpha
Helix 80	AI8	C	727	741	Right-handed alpha
Helix 81	AI9	C	741	748	Right-handed alpha
Helix 82	AJ1	C	789	793	Right-handed 310
Helix 83	AJ2	C	807	827	Right-handed alpha
Helix 84	AJ3	C	857	863	Right-handed alpha
Helix 85	AJ4	C	875	885	Right-handed alpha
Helix 86	AJ5	C	887	911	Right-handed alpha
Helix 87	AJ6	C	956	964	Right-handed alpha
Helix 88	AJ7	C	976	994	Right-handed alpha
Helix 89	AJ8	C	994	1005	Right-handed alpha
Helix 90	AJ9	C	1015	1026	Right-handed alpha
Helix 91	AK1	C	1031	1053	Right-handed alpha
Helix 92	AK2	D	339	347	Right-handed 310
Helix 93	AK3	D	400	410	Right-handed alpha
Helix 94	AK4	D	446	449	Right-handed 310
Helix 95	AK5	D	450	513	Right-handed alpha
Helix 96	AK6	D	517	576	Right-handed alpha
Helix 97	AK7	D	577	579	Right-handed 310

There are 18 sheets in PDB entry 8V8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	37	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	98	102	parallel
Strand 4	A	69	73	anti-parallel
Strand 5	A	79	82	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	212	first strand
Strand 2	A	189	197	anti-parallel
Strand 3	A	284	289	parallel
Strand 4	A	250	254	anti-parallel
Strand 5	A	260	261	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	326	first strand
Strand 2	A	483	485	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	392	first strand
Strand 2	A	333	341	anti-parallel
Strand 3	A	472	477	anti-parallel
Strand 4	A	439	444	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	354	362	anti-parallel
Strand 3	A	401	408	anti-parallel
Strand 4	A	420	428	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	752	first strand
Strand 2	A	760	761	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	771	first strand
Strand 2	A	778	784	anti-parallel
Strand 3	A	796	803	anti-parallel
Strand 4	A	845	849	anti-parallel
Strand 5	A	838	842	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	854	856	first strand
Strand 2	A	921	924	anti-parallel
Strand 3	A	929	931	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	368	374	anti-parallel
Strand 3	B	377	383	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	37	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	98	102	parallel
Strand 4	C	69	73	anti-parallel
Strand 5	C	79	82	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	212	first strand
Strand 2	C	189	197	anti-parallel
Strand 3	C	284	289	parallel
Strand 4	C	250	254	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	326	first strand
Strand 2	C	483	485	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	392	first strand
Strand 2	C	333	341	anti-parallel
Strand 3	C	472	477	anti-parallel
Strand 4	C	439	444	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	366	first strand
Strand 2	C	355	362	anti-parallel
Strand 3	C	401	409	anti-parallel
Strand 4	C	419	428	anti-parallel
Strand 5	C	446	447	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	751	752	first strand
Strand 2	C	760	761	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	770	771	first strand
Strand 2	C	779	784	anti-parallel
Strand 3	C	796	803	anti-parallel
Strand 4	C	845	849	anti-parallel
Strand 5	C	838	842	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	854	856	first strand
Strand 2	C	921	924	anti-parallel
Strand 3	C	929	931	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	359	first strand
Strand 2	D	368	374	anti-parallel
Strand 3	D	377	383	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V8H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8H