Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V8I entry

There are 4 chains in PDB entry 8V8I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	PHE 1059
B	ASP 337	GLN 586
C	PRO 2	HIS 1060
D	GLU 332	TYR 580

There are105 helices in PDB entry 8V8I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	53	Right-handed alpha
Helix 2	AA2	A	54	56	Right-handed 310
Helix 3	AA3	A	58	62	Right-handed 310
Helix 4	AA4	A	64	68	Right-handed 310
Helix 5	AA5	A	107	122	Right-handed alpha
Helix 6	AA6	A	124	128	Right-handed 310
Helix 7	AA7	A	133	143	Right-handed alpha
Helix 8	AA8	A	143	155	Right-handed alpha
Helix 9	AA9	A	157	167	Right-handed alpha
Helix 10	AB1	A	178	183	Right-handed alpha
Helix 11	AB2	A	216	229	Right-handed alpha
Helix 12	AB3	A	235	247	Right-handed alpha
Helix 13	AB4	A	266	269	Right-handed 310
Helix 14	AB5	A	270	280	Right-handed alpha
Helix 15	AB6	A	290	295	Right-handed alpha
Helix 16	AB7	A	328	330	Right-handed 310
Helix 17	AB8	A	488	497	Right-handed alpha
Helix 18	AB9	A	527	535	Right-handed alpha
Helix 19	AC1	A	544	559	Right-handed alpha
Helix 20	AC2	A	560	563	Right-handed 310
Helix 21	AC3	A	564	570	Right-handed alpha
Helix 22	AC4	A	576	589	Right-handed alpha
Helix 23	AC5	A	594	599	Right-handed alpha
Helix 24	AC6	A	600	603	Right-handed 310
Helix 25	AC7	A	608	623	Right-handed alpha
Helix 26	AC8	A	624	631	Right-handed alpha
Helix 27	AC9	A	631	638	Right-handed alpha
Helix 28	AD1	A	647	660	Right-handed alpha
Helix 29	AD2	A	660	674	Right-handed alpha
Helix 30	AD3	A	680	695	Right-handed alpha
Helix 31	AD4	A	697	721	Right-handed alpha
Helix 32	AD5	A	727	741	Right-handed alpha
Helix 33	AD6	A	741	748	Right-handed alpha
Helix 34	AD7	A	765	769	Right-handed 310
Helix 35	AD8	A	807	826	Right-handed alpha
Helix 36	AD9	A	857	863	Right-handed alpha
Helix 37	AE1	A	874	885	Right-handed alpha
Helix 38	AE2	A	889	912	Right-handed alpha
Helix 39	AE3	A	917	919	Right-handed 310
Helix 40	AE4	A	934	941	Right-handed alpha
Helix 41	AE5	A	957	966	Right-handed alpha
Helix 42	AE6	A	974	993	Right-handed alpha
Helix 43	AE7	A	994	1004	Right-handed alpha
Helix 44	AE8	A	1015	1020	Right-handed alpha
Helix 45	AE9	A	1020	1027	Right-handed alpha
Helix 46	AF1	A	1031	1046	Right-handed alpha
Helix 47	AF2	B	342	347	Right-handed alpha
Helix 48	AF3	B	401	409	Right-handed alpha
Helix 49	AF4	B	453	515	Right-handed alpha
Helix 50	AF5	B	517	565	Right-handed alpha
Helix 51	AF6	B	566	572	Right-handed alpha
Helix 52	AF7	B	574	578	Right-handed 310
Helix 53	AF8	C	41	52	Right-handed alpha
Helix 54	AF9	C	64	68	Right-handed 310
Helix 55	AG1	C	89	93	Right-handed 310
Helix 56	AG2	C	107	122	Right-handed alpha
Helix 57	AG3	C	124	129	Right-handed alpha
Helix 58	AG4	C	133	143	Right-handed alpha
Helix 59	AG5	C	143	155	Right-handed alpha
Helix 60	AG6	C	157	167	Right-handed alpha
Helix 61	AG7	C	178	185	Right-handed alpha
Helix 62	AG8	C	216	229	Right-handed alpha
Helix 63	AG9	C	235	247	Right-handed alpha
Helix 64	AH1	C	266	269	Right-handed 310
Helix 65	AH2	C	270	280	Right-handed alpha
Helix 66	AH3	C	290	295	Right-handed alpha
Helix 67	AH4	C	326	330	Right-handed 310
Helix 68	AH5	C	488	497	Right-handed alpha
Helix 69	AH6	C	525	530	Right-handed alpha
Helix 70	AH7	C	531	537	Right-handed alpha
Helix 71	AH8	C	544	554	Right-handed alpha
Helix 72	AH9	C	554	559	Right-handed alpha
Helix 73	AI1	C	560	563	Right-handed 310
Helix 74	AI2	C	564	570	Right-handed alpha
Helix 75	AI3	C	576	589	Right-handed alpha
Helix 76	AI4	C	594	599	Right-handed alpha
Helix 77	AI5	C	600	603	Right-handed 310
Helix 78	AI6	C	608	623	Right-handed alpha
Helix 79	AI7	C	624	631	Right-handed alpha
Helix 80	AI8	C	631	638	Right-handed alpha
Helix 81	AI9	C	647	658	Right-handed alpha
Helix 82	AJ1	C	660	674	Right-handed alpha
Helix 83	AJ2	C	680	695	Right-handed alpha
Helix 84	AJ3	C	697	721	Right-handed alpha
Helix 85	AJ4	C	727	741	Right-handed alpha
Helix 86	AJ5	C	741	748	Right-handed alpha
Helix 87	AJ6	C	789	793	Right-handed 310
Helix 88	AJ7	C	807	828	Right-handed alpha
Helix 89	AJ8	C	857	864	Right-handed alpha
Helix 90	AJ9	C	875	885	Right-handed alpha
Helix 91	AK1	C	888	912	Right-handed alpha
Helix 92	AK2	C	917	919	Right-handed 310
Helix 93	AK3	C	934	941	Right-handed alpha
Helix 94	AK4	C	957	965	Right-handed alpha
Helix 95	AK5	C	974	993	Right-handed alpha
Helix 96	AK6	C	994	1004	Right-handed alpha
Helix 97	AK7	C	1005	1007	Right-handed 310
Helix 98	AK8	C	1015	1020	Right-handed alpha
Helix 99	AK9	C	1020	1027	Right-handed alpha
Helix 100	AL1	C	1031	1048	Right-handed alpha
Helix 101	AL2	D	339	345	Right-handed alpha
Helix 102	AL3	D	400	411	Right-handed alpha
Helix 103	AL4	D	449	515	Right-handed alpha
Helix 104	AL5	D	520	565	Right-handed alpha
Helix 105	AL6	D	566	572	Right-handed alpha

There are 20 sheets in PDB entry 8V8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	37	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	98	102	parallel
Strand 4	A	69	73	anti-parallel
Strand 5	A	79	82	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	212	first strand
Strand 2	A	189	197	anti-parallel
Strand 3	A	284	289	parallel
Strand 4	A	250	254	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	326	first strand
Strand 2	A	483	485	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	392	first strand
Strand 2	A	333	341	anti-parallel
Strand 3	A	472	477	anti-parallel
Strand 4	A	439	444	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	353	362	anti-parallel
Strand 3	A	376	377	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	353	362	anti-parallel
Strand 3	A	400	408	anti-parallel
Strand 4	A	420	428	anti-parallel
Strand 5	A	446	447	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	752	first strand
Strand 2	A	760	761	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	771	first strand
Strand 2	A	779	784	anti-parallel
Strand 3	A	796	803	anti-parallel
Strand 4	A	845	849	anti-parallel
Strand 5	A	838	842	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	854	856	first strand
Strand 2	A	921	924	anti-parallel
Strand 3	A	929	931	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	358	first strand
Strand 2	B	369	372	anti-parallel
Strand 3	B	379	382	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	37	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	98	102	parallel
Strand 4	C	69	73	anti-parallel
Strand 5	C	79	82	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	212	first strand
Strand 2	C	189	196	anti-parallel
Strand 3	C	284	289	parallel
Strand 4	C	250	254	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	392	first strand
Strand 2	C	333	341	anti-parallel
Strand 3	C	472	477	anti-parallel
Strand 4	C	439	444	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	366	first strand
Strand 2	C	353	362	anti-parallel
Strand 3	C	376	377	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	366	first strand
Strand 2	C	353	362	anti-parallel
Strand 3	C	400	408	anti-parallel
Strand 4	C	420	428	anti-parallel
Strand 5	C	446	447	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	751	752	first strand
Strand 2	C	760	761	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	770	771	first strand
Strand 2	C	779	784	anti-parallel
Strand 3	C	796	803	anti-parallel
Strand 4	C	845	849	anti-parallel
Strand 5	C	838	840	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	854	856	first strand
Strand 2	C	921	924	anti-parallel
Strand 3	C	929	931	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	359	first strand
Strand 2	D	368	374	anti-parallel
Strand 3	D	377	382	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	385	first strand
Strand 2	D	390	391	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V8I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8I