Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V8J entry

There are 2 chains in PDB entry 8V8J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	GLN 1064
B	MET 326	ARG 544

There are 95 helices in PDB entry 8V8J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	54	Right-handed alpha
Helix 2	AA2	A	64	68	Right-handed 310
Helix 3	AA3	A	89	93	Right-handed 310
Helix 4	AA4	A	107	122	Right-handed alpha
Helix 5	AA5	A	125	131	Right-handed alpha
Helix 6	AA6	A	133	143	Right-handed alpha
Helix 7	AA7	A	143	155	Right-handed alpha
Helix 8	AA8	A	157	167	Right-handed alpha
Helix 9	AA9	A	178	183	Right-handed alpha
Helix 10	AB1	A	216	231	Right-handed alpha
Helix 11	AB2	A	235	247	Right-handed alpha
Helix 12	AB3	A	266	269	Right-handed 310
Helix 13	AB4	A	270	280	Right-handed alpha
Helix 14	AB5	A	290	297	Right-handed alpha
Helix 15	AB6	A	488	497	Right-handed alpha
Helix 16	AB7	A	527	535	Right-handed alpha
Helix 17	AB8	A	544	554	Right-handed alpha
Helix 18	AB9	A	557	563	Right-handed 310
Helix 19	AC1	A	564	571	Right-handed alpha
Helix 20	AC2	A	576	589	Right-handed alpha
Helix 21	AC3	A	594	600	Right-handed alpha
Helix 22	AC4	A	601	603	Right-handed 310
Helix 23	AC5	A	608	623	Right-handed alpha
Helix 24	AC6	A	624	631	Right-handed alpha
Helix 25	AC7	A	631	639	Right-handed alpha
Helix 26	AC8	A	647	658	Right-handed alpha
Helix 27	AC9	A	660	673	Right-handed alpha
Helix 28	AD1	A	677	696	Right-handed alpha
Helix 29	AD2	A	697	721	Right-handed alpha
Helix 30	AD3	A	727	740	Right-handed alpha
Helix 31	AD4	A	741	748	Right-handed alpha
Helix 32	AD5	A	789	793	Right-handed 310
Helix 33	AD6	A	807	827	Right-handed alpha
Helix 34	AD7	A	857	864	Right-handed alpha
Helix 35	AD8	A	874	885	Right-handed alpha
Helix 36	AD9	A	888	912	Right-handed alpha
Helix 37	AE1	A	933	940	Right-handed alpha
Helix 38	AE2	A	956	965	Right-handed alpha
Helix 39	AE3	A	974	994	Right-handed alpha
Helix 40	AE4	A	994	1005	Right-handed alpha
Helix 41	AE5	A	1015	1020	Right-handed alpha
Helix 42	AE6	A	1020	1027	Right-handed alpha
Helix 43	AE7	A	1031	1053	Right-handed alpha
Helix 44	AE8	B	340	345	Right-handed alpha
Helix 45	AE9	B	385	389	Right-handed 310
Helix 46	AF1	B	404	410	Right-handed alpha
Helix 47	AF2	B	449	513	Right-handed alpha
Helix 48	AF3	B	517	574	Right-handed alpha
Helix 49	AF4	C	41	56	Right-handed alpha
Helix 50	AF5	C	64	68	Right-handed 310
Helix 51	AF6	C	88	93	Right-handed 310
Helix 52	AF7	C	107	122	Right-handed alpha
Helix 53	AF8	C	124	131	Right-handed alpha
Helix 54	AF9	C	133	155	Right-handed alpha
Helix 55	AG1	C	159	167	Right-handed alpha
Helix 56	AG2	C	178	183	Right-handed alpha
Helix 57	AG3	C	216	231	Right-handed alpha
Helix 58	AG4	C	235	248	Right-handed alpha
Helix 59	AG5	C	266	269	Right-handed 310
Helix 60	AG6	C	270	280	Right-handed alpha
Helix 61	AG7	C	290	297	Right-handed alpha
Helix 62	AG8	C	488	497	Right-handed alpha
Helix 63	AG9	C	527	535	Right-handed alpha
Helix 64	AH1	C	544	554	Right-handed alpha
Helix 65	AH2	C	556	563	Right-handed 310
Helix 66	AH3	C	564	571	Right-handed alpha
Helix 67	AH4	C	576	589	Right-handed alpha
Helix 68	AH5	C	594	599	Right-handed alpha
Helix 69	AH6	C	600	603	Right-handed 310
Helix 70	AH7	C	608	623	Right-handed alpha
Helix 71	AH8	C	624	631	Right-handed alpha
Helix 72	AH9	C	631	639	Right-handed alpha
Helix 73	AI1	C	647	660	Right-handed alpha
Helix 74	AI2	C	660	673	Right-handed alpha
Helix 75	AI3	C	677	696	Right-handed alpha
Helix 76	AI4	C	697	721	Right-handed alpha
Helix 77	AI5	C	727	741	Right-handed alpha
Helix 78	AI6	C	741	748	Right-handed alpha
Helix 79	AI7	C	789	793	Right-handed 310
Helix 80	AI8	C	807	827	Right-handed alpha
Helix 81	AI9	C	857	864	Right-handed alpha
Helix 82	AJ1	C	875	885	Right-handed alpha
Helix 83	AJ2	C	887	912	Right-handed alpha
Helix 84	AJ3	C	933	940	Right-handed alpha
Helix 85	AJ4	C	956	964	Right-handed alpha
Helix 86	AJ5	C	974	994	Right-handed alpha
Helix 87	AJ6	C	994	1005	Right-handed alpha
Helix 88	AJ7	C	1015	1020	Right-handed alpha
Helix 89	AJ8	C	1020	1027	Right-handed alpha
Helix 90	AJ9	C	1031	1053	Right-handed alpha
Helix 91	AK1	D	343	347	Right-handed 310
Helix 92	AK2	D	405	410	Right-handed alpha
Helix 93	AK3	D	448	515	Right-handed alpha
Helix 94	AK4	D	517	574	Right-handed alpha
Helix 95	AK5	D	575	578	Right-handed 310

There are 19 sheets in PDB entry 8V8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	37	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	98	102	parallel
Strand 4	A	69	73	anti-parallel
Strand 5	A	79	82	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	212	first strand
Strand 2	A	189	197	anti-parallel
Strand 3	A	284	289	parallel
Strand 4	A	250	254	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	326	first strand
Strand 2	A	483	485	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	392	first strand
Strand 2	A	333	341	anti-parallel
Strand 3	A	472	477	anti-parallel
Strand 4	A	440	444	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	354	362	anti-parallel
Strand 3	A	401	409	anti-parallel
Strand 4	A	419	428	anti-parallel
Strand 5	A	446	447	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	752	first strand
Strand 2	A	760	761	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	771	first strand
Strand 2	A	779	784	anti-parallel
Strand 3	A	796	803	anti-parallel
Strand 4	A	845	849	anti-parallel
Strand 5	A	838	842	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	854	856	first strand
Strand 2	A	921	924	anti-parallel
Strand 3	A	929	931	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	358	first strand
Strand 2	B	368	374	anti-parallel
Strand 3	B	377	383	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	37	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	98	102	parallel
Strand 4	C	69	73	anti-parallel
Strand 5	C	79	82	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	212	first strand
Strand 2	C	189	197	anti-parallel
Strand 3	C	284	289	parallel
Strand 4	C	250	254	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	326	first strand
Strand 2	C	483	485	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	386	392	first strand
Strand 2	C	333	341	anti-parallel
Strand 3	C	472	477	anti-parallel
Strand 4	C	439	444	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	357	first strand
Strand 2	C	401	409	anti-parallel
Strand 3	C	360	362	anti-parallel
Strand 4	C	365	366	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	357	first strand
Strand 2	C	401	409	anti-parallel
Strand 3	C	419	428	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	751	752	first strand
Strand 2	C	760	761	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	770	771	first strand
Strand 2	C	779	784	anti-parallel
Strand 3	C	796	803	anti-parallel
Strand 4	C	845	849	anti-parallel
Strand 5	C	838	842	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	854	856	first strand
Strand 2	C	921	924	anti-parallel
Strand 3	C	929	931	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	359	first strand
Strand 2	D	368	374	anti-parallel
Strand 3	D	377	383	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V8J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8J