Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V8M entry

There are 8 chains in PDB entry 8V8M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 8	GLY 169
A	PHE 171	THR 396
B	VAL 8	GLY 169
B	PHE 171	ILE 395
C	VAL 6	GLY 167
C	PHE 169	THR 394
D	THR 9	GLY 169
D	PHE 171	THR 396

There are 72 helices in PDB entry 8V8M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	17	Right-handed alpha
Helix 2	AA2	A	41	50	Right-handed alpha
Helix 3	AA3	A	55	69	Right-handed alpha
Helix 4	AA4	A	79	85	Right-handed alpha
Helix 5	AA5	A	86	91	Right-handed alpha
Helix 6	AA6	A	96	124	Right-handed alpha
Helix 7	AA7	A	126	130	Right-handed 310
Helix 8	AA8	A	145	155	Right-handed alpha
Helix 9	AA9	A	171	187	Right-handed alpha
Helix 10	AB1	A	199	203	Right-handed 310
Helix 11	AB2	A	211	221	Right-handed alpha
Helix 12	AB3	A	276	283	Right-handed alpha
Helix 13	AB4	A	284	294	Right-handed alpha
Helix 14	AB5	A	295	297	Right-handed 310
Helix 15	AB6	A	312	324	Right-handed alpha
Helix 16	AB7	A	326	329	Right-handed 310
Helix 17	AB8	A	330	341	Right-handed alpha
Helix 18	AB9	A	343	345	Right-handed 310
Helix 19	AC1	A	346	363	Right-handed alpha
Helix 20	AC2	B	9	16	Right-handed alpha
Helix 21	AC3	B	41	50	Right-handed alpha
Helix 22	AC4	B	55	69	Right-handed alpha
Helix 23	AC5	B	79	85	Right-handed alpha
Helix 24	AC6	B	86	91	Right-handed alpha
Helix 25	AC7	B	96	124	Right-handed alpha
Helix 26	AC8	B	126	130	Right-handed 310
Helix 27	AC9	B	145	155	Right-handed alpha
Helix 28	AD1	B	171	187	Right-handed alpha
Helix 29	AD2	B	199	203	Right-handed 310
Helix 30	AD3	B	211	221	Right-handed alpha
Helix 31	AD4	B	276	294	Right-handed alpha
Helix 32	AD5	B	295	297	Right-handed 310
Helix 33	AD6	B	312	323	Right-handed alpha
Helix 34	AD7	B	330	341	Right-handed alpha
Helix 35	AD8	B	343	345	Right-handed 310
Helix 36	AD9	B	346	362	Right-handed alpha
Helix 37	AE1	C	8	13	Right-handed alpha
Helix 38	AE2	C	14	16	Right-handed 310
Helix 39	AE3	C	39	48	Right-handed alpha
Helix 40	AE4	C	53	66	Right-handed alpha
Helix 41	AE5	C	77	83	Right-handed alpha
Helix 42	AE6	C	84	89	Right-handed alpha
Helix 43	AE7	C	94	122	Right-handed alpha
Helix 44	AE8	C	124	128	Right-handed 310
Helix 45	AE9	C	143	153	Right-handed alpha
Helix 46	AF1	C	169	185	Right-handed alpha
Helix 47	AF2	C	197	201	Right-handed 310
Helix 48	AF3	C	209	219	Right-handed alpha
Helix 49	AF4	C	274	292	Right-handed alpha
Helix 50	AF5	C	293	295	Right-handed 310
Helix 51	AF6	C	310	322	Right-handed alpha
Helix 52	AF7	C	324	327	Right-handed 310
Helix 53	AF8	C	328	339	Right-handed alpha
Helix 54	AF9	C	341	343	Right-handed 310
Helix 55	AG1	C	344	360	Right-handed alpha
Helix 56	AG2	D	10	18	Right-handed alpha
Helix 57	AG3	D	41	50	Right-handed alpha
Helix 58	AG4	D	55	69	Right-handed alpha
Helix 59	AG5	D	79	85	Right-handed alpha
Helix 60	AG6	D	86	91	Right-handed alpha
Helix 61	AG7	D	96	124	Right-handed alpha
Helix 62	AG8	D	126	130	Right-handed 310
Helix 63	AG9	D	145	155	Right-handed alpha
Helix 64	AH1	D	171	186	Right-handed alpha
Helix 65	AH2	D	199	203	Right-handed 310
Helix 66	AH3	D	211	221	Right-handed alpha
Helix 67	AH4	D	276	294	Right-handed alpha
Helix 68	AH5	D	295	297	Right-handed 310
Helix 69	AH6	D	312	323	Right-handed alpha
Helix 70	AH7	D	330	341	Right-handed alpha
Helix 71	AH8	D	343	345	Right-handed 310
Helix 72	AH9	D	346	362	Right-handed alpha

There are 13 sheets in PDB entry 8V8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	165	first strand
Strand 2	A	132	136	parallel
Strand 3	A	191	198	parallel
Strand 4	A	224	231	anti-parallel
Strand 5	A	24	31	anti-parallel
Strand 6	A	243	252	anti-parallel
Strand 7	A	384	392	anti-parallel
Strand 8	A	373	380	anti-parallel
Strand 9	A	305	308	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	73	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	272	273	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	265	first strand
Strand 2	A	268	269	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	166	first strand
Strand 2	B	132	137	parallel
Strand 3	B	191	198	parallel
Strand 4	B	224	231	anti-parallel
Strand 5	B	24	31	anti-parallel
Strand 6	B	243	252	anti-parallel
Strand 7	B	384	392	anti-parallel
Strand 8	B	373	380	anti-parallel
Strand 9	B	305	308	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	73	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	265	first strand
Strand 2	B	268	273	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	164	first strand
Strand 2	C	130	135	parallel
Strand 3	C	189	196	parallel
Strand 4	C	222	229	anti-parallel
Strand 5	C	22	29	anti-parallel
Strand 6	C	241	250	anti-parallel
Strand 7	C	382	390	anti-parallel
Strand 8	C	371	378	anti-parallel
Strand 9	C	303	306	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	71	73	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	263	first strand
Strand 2	C	266	271	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	166	first strand
Strand 2	D	132	137	parallel
Strand 3	D	191	198	parallel
Strand 4	D	224	231	anti-parallel
Strand 5	D	24	31	anti-parallel
Strand 6	D	243	252	anti-parallel
Strand 7	D	384	392	anti-parallel
Strand 8	D	373	380	anti-parallel
Strand 9	D	305	308	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	73	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	265	first strand
Strand 2	D	268	273	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V8M

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8M