Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V8N entry

There are 2 chains in PDB entry 8V8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8ILE 395
B
 ALA 6ILE 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8V8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 18Right-handed alpha
Helix 2
AA2
A
41 50Right-handed alpha
Helix 3
AA3
A
55 69Right-handed alpha
Helix 4
AA4
A
79 85Right-handed alpha
Helix 5
AA5
A
86 91Right-handed alpha
Helix 6
AA6
A
96 124Right-handed alpha
Helix 7
AA7
A
126 130Right-handed 310
Helix 8
AA8
A
145 155Right-handed alpha
Helix 9
AA9
A
171 187Right-handed alpha
Helix 10
AB1
A
199 203Right-handed 310
Helix 11
AB2
A
211 221Right-handed alpha
Helix 12
AB3
A
276 294Right-handed alpha
Helix 13
AB4
A
295 297Right-handed 310
Helix 14
AB5
A
300 304Right-handed 310
Helix 15
AB6
A
312 323Right-handed alpha
Helix 16
AB7
A
326 329Right-handed 310
Helix 17
AB8
A
330 341Right-handed alpha
Helix 18
AB9
A
343 345Right-handed 310
Helix 19
AC1
A
346 362Right-handed alpha
Helix 20
AC2
B
9 18Right-handed alpha
Helix 21
AC3
B
41 50Right-handed alpha
Helix 22
AC4
B
55 69Right-handed alpha
Helix 23
AC5
B
79 86Right-handed alpha
Helix 24
AC6
B
86 91Right-handed alpha
Helix 25
AC7
B
96 124Right-handed alpha
Helix 26
AC8
B
126 130Right-handed 310
Helix 27
AC9
B
145 155Right-handed alpha
Helix 28
AD1
B
171 187Right-handed alpha
Helix 29
AD2
B
199 203Right-handed 310
Helix 30
AD3
B
211 221Right-handed alpha
Helix 31
AD4
B
276 294Right-handed alpha
Helix 32
AD5
B
295 297Right-handed 310
Helix 33
AD6
B
312 323Right-handed alpha
Helix 34
AD7
B
330 341Right-handed alpha
Helix 35
AD8
B
343 345Right-handed 310
Helix 36
AD9
B
346 362Right-handed alpha
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There are 6 sheets in PDB entry 8V8N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 166first strand
Strand 2
A
132 137parallel
Strand 3
A
191 198parallel
Strand 4
A
224 231anti-parallel
Strand 5
A
23 31anti-parallel
Strand 6
A
243 252anti-parallel
Strand 7
A
384 391anti-parallel
Strand 8
A
373 380anti-parallel
Strand 9
A
305 308parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
73 75anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 265first strand
Strand 2
A
268 273anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 166first strand
Strand 2
B
132 137parallel
Strand 3
B
191 198parallel
Strand 4
B
224 231anti-parallel
Strand 5
B
24 31anti-parallel
Strand 6
B
243 252anti-parallel
Strand 7
B
384 392anti-parallel
Strand 8
B
373 380anti-parallel
Strand 9
B
305 308parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
73 75anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 265first strand
Strand 2
B
268 273anti-parallel
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