Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V8O entry

There are 2 chains in PDB entry 8V8O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7ALA 219
B
 THR 7ALA 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 8V8O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 65Right-handed alpha
Helix 2
AA2
A
66 69Right-handed 310
Helix 3
AA3
A
72 79Right-handed alpha
Helix 4
AA4
A
79 88Right-handed alpha
Helix 5
AA5
A
105 123Right-handed alpha
Helix 6
AA6
A
128 142Right-handed alpha
Helix 7
AA7
A
183 196Right-handed alpha
Helix 8
AA8
A
202 217Right-handed alpha
Helix 9
AA9
B
58 65Right-handed alpha
Helix 10
AB1
B
66 69Right-handed 310
Helix 11
AB2
B
72 79Right-handed alpha
Helix 12
AB3
B
79 88Right-handed alpha
Helix 13
AB4
B
105 123Right-handed alpha
Helix 14
AB5
B
127 143Right-handed alpha
Helix 15
AB6
B
183 196Right-handed alpha
Helix 16
AB7
B
202 217Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8V8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
13 15anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
49 56anti-parallel
Strand 4
A
93 99anti-parallel
Strand 5
A
151 156anti-parallel
Strand 6
A
166 170anti-parallel
Strand 7
A
177 180anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
45 47anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
145 146anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
13 15anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
29 37anti-parallel
Strand 3
B
49 56anti-parallel
Strand 4
B
93 99anti-parallel
Strand 5
B
151 156anti-parallel
Strand 6
B
166 170anti-parallel
Strand 7
B
177 180anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
145 146anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il