Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V8P entry

There are 8 chains in PDB entry 8V8P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 3	LYS 213
B	PRO 4	THR 212
C	VAL 3	LYS 213
D	VAL 3	LEU 211
E	PRO 4	THR 212
F	VAL 3	THR 212
G	VAL 3	LYS 213
H	PRO 4	THR 212

There are 57 helices in PDB entry 8V8P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	65	Right-handed alpha
Helix 2	AA2	A	68	75	Right-handed alpha
Helix 3	AA3	A	75	85	Right-handed alpha
Helix 4	AA4	A	101	119	Right-handed alpha
Helix 5	AA5	A	123	137	Right-handed alpha
Helix 6	AA6	A	178	191	Right-handed alpha
Helix 7	AA7	A	196	211	Right-handed alpha
Helix 8	AA8	B	55	65	Right-handed alpha
Helix 9	AA9	B	68	74	Right-handed alpha
Helix 10	AB1	B	75	84	Right-handed alpha
Helix 11	AB2	B	101	118	Right-handed alpha
Helix 12	AB3	B	123	138	Right-handed alpha
Helix 13	AB4	B	178	188	Right-handed alpha
Helix 14	AB5	B	196	209	Right-handed alpha
Helix 15	AB6	C	55	65	Right-handed alpha
Helix 16	AB7	C	68	73	Right-handed alpha
Helix 17	AB8	C	75	84	Right-handed alpha
Helix 18	AB9	C	101	118	Right-handed alpha
Helix 19	AC1	C	123	138	Right-handed alpha
Helix 20	AC2	C	178	191	Right-handed alpha
Helix 21	AC3	C	196	211	Right-handed alpha
Helix 22	AC4	D	56	65	Right-handed alpha
Helix 23	AC5	D	75	84	Right-handed alpha
Helix 24	AC6	D	101	118	Right-handed alpha
Helix 25	AC7	D	123	138	Right-handed alpha
Helix 26	AC8	D	178	191	Right-handed alpha
Helix 27	AC9	D	196	211	Right-handed alpha
Helix 28	AD1	E	55	65	Right-handed alpha
Helix 29	AD2	E	68	75	Right-handed alpha
Helix 30	AD3	E	75	85	Right-handed alpha
Helix 31	AD4	E	101	120	Right-handed alpha
Helix 32	AD5	E	123	138	Right-handed alpha
Helix 33	AD6	E	178	191	Right-handed alpha
Helix 34	AD7	E	196	211	Right-handed alpha
Helix 35	AD8	F	55	65	Right-handed alpha
Helix 36	AD9	F	68	74	Right-handed alpha
Helix 37	AE1	F	75	84	Right-handed alpha
Helix 38	AE2	F	101	120	Right-handed alpha
Helix 39	AE3	F	123	138	Right-handed alpha
Helix 40	AE4	F	178	191	Right-handed alpha
Helix 41	AE5	F	196	211	Right-handed alpha
Helix 42	AE6	G	56	65	Right-handed alpha
Helix 43	AE7	G	70	75	Right-handed alpha
Helix 44	AE8	G	75	84	Right-handed alpha
Helix 45	AE9	G	101	119	Right-handed alpha
Helix 46	AF1	G	123	138	Right-handed alpha
Helix 47	AF2	G	178	191	Right-handed alpha
Helix 48	AF3	G	196	212	Right-handed alpha
Helix 49	AF4	H	54	65	Right-handed alpha
Helix 50	AF5	H	68	74	Right-handed alpha
Helix 51	AF6	H	77	84	Right-handed alpha
Helix 52	AF7	H	101	108	Right-handed alpha
Helix 53	AF8	H	108	113	Right-handed alpha
Helix 54	AF9	H	114	119	Right-handed alpha
Helix 55	AG1	H	123	136	Right-handed alpha
Helix 56	AG2	H	178	191	Right-handed alpha
Helix 57	AG3	H	196	211	Right-handed alpha

There are 24 sheets in PDB entry 8V8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	11	13	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	26	38	anti-parallel
Strand 3	A	41	53	anti-parallel
Strand 4	A	89	95	anti-parallel
Strand 5	A	147	152	anti-parallel
Strand 6	A	158	163	anti-parallel
Strand 7	A	174	176	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	141	142	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	11	13	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	38	first strand
Strand 2	B	41	53	anti-parallel
Strand 3	B	89	95	anti-parallel
Strand 4	B	147	152	anti-parallel
Strand 5	B	157	163	anti-parallel
Strand 6	B	174	177	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	141	142	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	11	13	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	17	first strand
Strand 2	C	26	38	anti-parallel
Strand 3	C	41	53	anti-parallel
Strand 4	C	89	95	anti-parallel
Strand 5	C	147	152	anti-parallel
Strand 6	C	158	163	anti-parallel
Strand 7	C	174	176	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	141	142	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	11	13	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	17	first strand
Strand 2	D	26	38	anti-parallel
Strand 3	D	41	53	anti-parallel
Strand 4	D	89	95	anti-parallel
Strand 5	D	147	152	anti-parallel
Strand 6	D	157	163	anti-parallel
Strand 7	D	174	177	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	141	142	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	11	13	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	17	first strand
Strand 2	E	26	36	anti-parallel
Strand 3	E	43	53	anti-parallel
Strand 4	E	89	95	anti-parallel
Strand 5	E	147	152	anti-parallel
Strand 6	E	157	163	anti-parallel
Strand 7	E	174	177	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	100	first strand
Strand 2	E	141	142	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	8	first strand
Strand 2	F	11	13	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	17	first strand
Strand 2	F	26	36	anti-parallel
Strand 3	F	43	53	anti-parallel
Strand 4	F	89	95	anti-parallel
Strand 5	F	147	152	anti-parallel
Strand 6	F	157	163	anti-parallel
Strand 7	F	174	177	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	100	first strand
Strand 2	F	141	142	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	8	first strand
Strand 2	G	11	13	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	17	first strand
Strand 2	G	26	37	anti-parallel
Strand 3	G	42	53	anti-parallel
Strand 4	G	89	95	anti-parallel
Strand 5	G	147	152	anti-parallel
Strand 6	G	158	163	anti-parallel
Strand 7	G	174	176	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	100	first strand
Strand 2	G	141	142	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	8	first strand
Strand 2	H	11	13	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	17	first strand
Strand 2	H	26	36	anti-parallel
Strand 3	H	43	53	anti-parallel
Strand 4	H	89	95	anti-parallel
Strand 5	H	147	152	anti-parallel
Strand 6	H	158	163	anti-parallel
Strand 7	H	174	176	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	100	first strand
Strand 2	H	141	142	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V8P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8P