Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V8U entry

There are 2 chains in PDB entry 8V8U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 1068
B	MET 322	ASN 488

There are119 helices in PDB entry 8V8U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	53	Right-handed alpha
Helix 2	AA2	A	54	56	Right-handed 310
Helix 3	AA3	A	58	62	Right-handed 310
Helix 4	AA4	A	64	68	Right-handed 310
Helix 5	AA5	A	88	92	Right-handed 310
Helix 6	AA6	A	107	122	Right-handed alpha
Helix 7	AA7	A	124	130	Right-handed alpha
Helix 8	AA8	A	133	143	Right-handed alpha
Helix 9	AA9	A	143	156	Right-handed alpha
Helix 10	AB1	A	159	167	Right-handed alpha
Helix 11	AB2	A	178	183	Right-handed alpha
Helix 12	AB3	A	216	229	Right-handed alpha
Helix 13	AB4	A	235	247	Right-handed alpha
Helix 14	AB5	A	266	269	Right-handed 310
Helix 15	AB6	A	270	280	Right-handed alpha
Helix 16	AB7	A	290	297	Right-handed alpha
Helix 17	AB8	A	328	330	Right-handed 310
Helix 18	AB9	A	394	396	Right-handed 310
Helix 19	AC1	A	488	504	Right-handed alpha
Helix 20	AC2	A	514	518	Right-handed 310
Helix 21	AC3	A	524	537	Right-handed alpha
Helix 22	AC4	A	544	554	Right-handed alpha
Helix 23	AC5	A	557	563	Right-handed 310
Helix 24	AC6	A	564	570	Right-handed alpha
Helix 25	AC7	A	576	589	Right-handed alpha
Helix 26	AC8	A	594	599	Right-handed alpha
Helix 27	AC9	A	600	603	Right-handed 310
Helix 28	AD1	A	608	623	Right-handed alpha
Helix 29	AD2	A	624	631	Right-handed alpha
Helix 30	AD3	A	631	638	Right-handed alpha
Helix 31	AD4	A	639	642	Right-handed 310
Helix 32	AD5	A	647	658	Right-handed alpha
Helix 33	AD6	A	660	674	Right-handed alpha
Helix 34	AD7	A	680	693	Right-handed alpha
Helix 35	AD8	A	697	721	Right-handed alpha
Helix 36	AD9	A	722	726	Right-handed 310
Helix 37	AE1	A	727	740	Right-handed alpha
Helix 38	AE2	A	741	748	Right-handed alpha
Helix 39	AE3	A	807	827	Right-handed alpha
Helix 40	AE4	A	857	862	Right-handed alpha
Helix 41	AE5	A	875	885	Right-handed alpha
Helix 42	AE6	A	886	888	Right-handed 310
Helix 43	AE7	A	889	912	Right-handed alpha
Helix 44	AE8	A	940	944	Right-handed 310
Helix 45	AE9	A	956	965	Right-handed alpha
Helix 46	AF1	A	970	973	Right-handed 310
Helix 47	AF2	A	974	994	Right-handed alpha
Helix 48	AF3	A	994	1005	Right-handed alpha
Helix 49	AF4	A	1006	1009	Right-handed 310
Helix 50	AF5	A	1015	1020	Right-handed alpha
Helix 51	AF6	A	1020	1026	Right-handed alpha
Helix 52	AF7	A	1031	1046	Right-handed alpha
Helix 53	AF8	B	339	347	Right-handed alpha
Helix 54	AF9	B	400	405	Right-handed alpha
Helix 55	AG1	B	406	410	Right-handed 310
Helix 56	AG2	B	412	416	Right-handed 310
Helix 57	AG3	B	432	436	Right-handed 310
Helix 58	AG4	B	441	446	Right-handed alpha
Helix 59	AG5	B	447	515	Right-handed alpha
Helix 60	AG6	B	518	580	Right-handed alpha
Helix 61	AG7	B	581	586	Right-handed 310
Helix 62	AG8	B	591	596	Right-handed 310
Helix 63	AG9	C	41	54	Right-handed alpha
Helix 64	AH1	C	58	62	Right-handed 310
Helix 65	AH2	C	64	68	Right-handed 310
Helix 66	AH3	C	88	92	Right-handed 310
Helix 67	AH4	C	107	122	Right-handed alpha
Helix 68	AH5	C	127	131	Right-handed 310
Helix 69	AH6	C	133	143	Right-handed alpha
Helix 70	AH7	C	143	155	Right-handed alpha
Helix 71	AH8	C	156	158	Right-handed 310
Helix 72	AH9	C	159	167	Right-handed alpha
Helix 73	AI1	C	178	183	Right-handed alpha
Helix 74	AI2	C	216	230	Right-handed alpha
Helix 75	AI3	C	235	248	Right-handed alpha
Helix 76	AI4	C	266	269	Right-handed 310
Helix 77	AI5	C	270	279	Right-handed alpha
Helix 78	AI6	C	290	295	Right-handed alpha
Helix 79	AI7	C	328	330	Right-handed 310
Helix 80	AI8	C	488	497	Right-handed alpha
Helix 81	AI9	C	524	536	Right-handed alpha
Helix 82	AJ1	C	544	554	Right-handed alpha
Helix 83	AJ2	C	554	559	Right-handed alpha
Helix 84	AJ3	C	560	563	Right-handed 310
Helix 85	AJ4	C	564	570	Right-handed alpha
Helix 86	AJ5	C	576	589	Right-handed alpha
Helix 87	AJ6	C	594	599	Right-handed alpha
Helix 88	AJ7	C	600	603	Right-handed 310
Helix 89	AJ8	C	608	623	Right-handed alpha
Helix 90	AJ9	C	624	631	Right-handed alpha
Helix 91	AK1	C	631	638	Right-handed alpha
Helix 92	AK2	C	639	642	Right-handed 310
Helix 93	AK3	C	647	660	Right-handed alpha
Helix 94	AK4	C	660	674	Right-handed alpha
Helix 95	AK5	C	680	693	Right-handed alpha
Helix 96	AK6	C	697	721	Right-handed alpha
Helix 97	AK7	C	727	740	Right-handed alpha
Helix 98	AK8	C	741	748	Right-handed alpha
Helix 99	AK9	C	789	793	Right-handed 310
Helix 100	AL1	C	807	827	Right-handed alpha
Helix 101	AL2	C	857	862	Right-handed alpha
Helix 102	AL3	C	875	885	Right-handed alpha
Helix 103	AL4	C	886	888	Right-handed 310
Helix 104	AL5	C	889	912	Right-handed alpha
Helix 105	AL6	C	941	946	Right-handed alpha
Helix 106	AL7	C	956	965	Right-handed alpha
Helix 107	AL8	C	970	973	Right-handed 310
Helix 108	AL9	C	974	994	Right-handed alpha
Helix 109	AM1	C	994	1004	Right-handed alpha
Helix 110	AM2	C	1005	1009	Right-handed 310
Helix 111	AM3	C	1015	1026	Right-handed alpha
Helix 112	AM4	C	1031	1046	Right-handed alpha
Helix 113	AM5	D	339	347	Right-handed alpha
Helix 114	AM6	D	400	411	Right-handed alpha
Helix 115	AM7	D	432	437	Right-handed alpha
Helix 116	AM8	D	441	515	Right-handed alpha
Helix 117	AM9	D	518	565	Right-handed alpha
Helix 118	AN1	D	566	588	Right-handed alpha
Helix 119	AN2	D	591	596	Right-handed 310

There are 20 sheets in PDB entry 8V8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	37	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	98	102	parallel
Strand 4	A	69	73	anti-parallel
Strand 5	A	79	82	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	212	first strand
Strand 2	A	189	198	anti-parallel
Strand 3	A	284	289	parallel
Strand 4	A	250	254	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	326	first strand
Strand 2	A	483	485	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	392	first strand
Strand 2	A	333	341	anti-parallel
Strand 3	A	472	477	anti-parallel
Strand 4	A	439	444	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	353	362	anti-parallel
Strand 3	A	371	372	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	353	362	anti-parallel
Strand 3	A	401	410	anti-parallel
Strand 4	A	418	428	anti-parallel
Strand 5	A	446	447	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	752	first strand
Strand 2	A	760	761	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	771	first strand
Strand 2	A	779	784	anti-parallel
Strand 3	A	796	803	anti-parallel
Strand 4	A	845	849	anti-parallel
Strand 5	A	838	842	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	854	856	first strand
Strand 2	A	921	924	anti-parallel
Strand 3	A	929	931	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	37	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	98	102	parallel
Strand 4	C	69	73	anti-parallel
Strand 5	C	79	82	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	212	first strand
Strand 2	C	189	198	anti-parallel
Strand 3	C	284	289	parallel
Strand 4	C	250	254	anti-parallel
Strand 5	C	260	261	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	326	first strand
Strand 2	C	483	485	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	392	first strand
Strand 2	C	333	341	anti-parallel
Strand 3	C	472	477	anti-parallel
Strand 4	C	439	444	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	366	first strand
Strand 2	C	360	362	anti-parallel
Strand 3	C	400	411	anti-parallel
Strand 4	C	353	358	anti-parallel
Strand 5	C	376	377	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	372	first strand
Strand 2	C	353	358	anti-parallel
Strand 3	C	400	411	anti-parallel
Strand 4	C	417	428	anti-parallel
Strand 5	C	446	447	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	751	752	first strand
Strand 2	C	760	761	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	770	771	first strand
Strand 2	C	779	784	anti-parallel
Strand 3	C	796	803	anti-parallel
Strand 4	C	845	849	anti-parallel
Strand 5	C	838	842	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	854	856	first strand
Strand 2	C	921	924	anti-parallel
Strand 3	C	929	931	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	336	first strand
Strand 2	D	354	359	parallel
Strand 3	D	368	373	anti-parallel
Strand 4	D	378	386	anti-parallel
Strand 5	D	389	391	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	336	first strand
Strand 2	D	354	359	parallel
Strand 3	D	426	427	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V8U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8U