Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V8V entry

There are 3 chains in PDB entry 8V8V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	GLY 1049
B	LEU 449	ASN 600
C	MET 1	ASP 64

There are107 helices in PDB entry 8V8V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	54	Right-handed alpha
Helix 2	AA2	A	58	62	Right-handed 310
Helix 3	AA3	A	64	68	Right-handed 310
Helix 4	AA4	A	88	92	Right-handed 310
Helix 5	AA5	A	107	122	Right-handed alpha
Helix 6	AA6	A	124	131	Right-handed alpha
Helix 7	AA7	A	133	143	Right-handed alpha
Helix 8	AA8	A	143	156	Right-handed alpha
Helix 9	AA9	A	159	167	Right-handed alpha
Helix 10	AB1	A	178	183	Right-handed alpha
Helix 11	AB2	A	216	231	Right-handed alpha
Helix 12	AB3	A	235	248	Right-handed alpha
Helix 13	AB4	A	266	269	Right-handed 310
Helix 14	AB5	A	270	280	Right-handed alpha
Helix 15	AB6	A	290	296	Right-handed alpha
Helix 16	AB7	A	328	330	Right-handed 310
Helix 17	AB8	A	394	396	Right-handed 310
Helix 18	AB9	A	488	498	Right-handed alpha
Helix 19	AC1	A	524	537	Right-handed alpha
Helix 20	AC2	A	544	554	Right-handed alpha
Helix 21	AC3	A	554	560	Right-handed alpha
Helix 22	AC4	A	561	563	Right-handed 310
Helix 23	AC5	A	564	570	Right-handed alpha
Helix 24	AC6	A	576	589	Right-handed alpha
Helix 25	AC7	A	594	599	Right-handed alpha
Helix 26	AC8	A	600	603	Right-handed 310
Helix 27	AC9	A	608	623	Right-handed alpha
Helix 28	AD1	A	624	631	Right-handed alpha
Helix 29	AD2	A	631	638	Right-handed alpha
Helix 30	AD3	A	639	642	Right-handed 310
Helix 31	AD4	A	647	660	Right-handed alpha
Helix 32	AD5	A	660	673	Right-handed alpha
Helix 33	AD6	A	680	695	Right-handed alpha
Helix 34	AD7	A	697	721	Right-handed alpha
Helix 35	AD8	A	727	740	Right-handed alpha
Helix 36	AD9	A	741	748	Right-handed alpha
Helix 37	AE1	A	765	769	Right-handed 310
Helix 38	AE2	A	789	794	Right-handed alpha
Helix 39	AE3	A	807	827	Right-handed alpha
Helix 40	AE4	A	857	862	Right-handed alpha
Helix 41	AE5	A	875	885	Right-handed alpha
Helix 42	AE6	A	888	912	Right-handed alpha
Helix 43	AE7	A	942	946	Right-handed 310
Helix 44	AE8	A	956	965	Right-handed alpha
Helix 45	AE9	A	970	973	Right-handed 310
Helix 46	AF1	A	974	994	Right-handed alpha
Helix 47	AF2	A	994	1005	Right-handed alpha
Helix 48	AF3	A	1006	1009	Right-handed 310
Helix 49	AF4	A	1015	1027	Right-handed alpha
Helix 50	AF5	A	1031	1046	Right-handed alpha
Helix 51	AF6	B	450	515	Right-handed alpha
Helix 52	AF7	B	517	580	Right-handed alpha
Helix 53	AF8	B	592	598	Right-handed alpha
Helix 54	AF9	C	41	54	Right-handed alpha
Helix 55	AG1	C	58	62	Right-handed 310
Helix 56	AG2	C	64	68	Right-handed 310
Helix 57	AG3	C	88	93	Right-handed 310
Helix 58	AG4	C	107	122	Right-handed alpha
Helix 59	AG5	C	124	131	Right-handed 310
Helix 60	AG6	C	133	155	Right-handed alpha
Helix 61	AG7	C	159	167	Right-handed alpha
Helix 62	AG8	C	178	183	Right-handed alpha
Helix 63	AG9	C	216	231	Right-handed alpha
Helix 64	AH1	C	235	248	Right-handed alpha
Helix 65	AH2	C	266	269	Right-handed 310
Helix 66	AH3	C	270	280	Right-handed alpha
Helix 67	AH4	C	290	295	Right-handed alpha
Helix 68	AH5	C	328	330	Right-handed 310
Helix 69	AH6	C	394	396	Right-handed 310
Helix 70	AH7	C	488	499	Right-handed alpha
Helix 71	AH8	C	519	523	Right-handed 310
Helix 72	AH9	C	524	537	Right-handed alpha
Helix 73	AI1	C	544	554	Right-handed alpha
Helix 74	AI2	C	556	563	Right-handed 310
Helix 75	AI3	C	564	571	Right-handed alpha
Helix 76	AI4	C	576	589	Right-handed alpha
Helix 77	AI5	C	594	599	Right-handed alpha
Helix 78	AI6	C	600	603	Right-handed 310
Helix 79	AI7	C	608	623	Right-handed alpha
Helix 80	AI8	C	624	631	Right-handed alpha
Helix 81	AI9	C	631	638	Right-handed alpha
Helix 82	AJ1	C	639	642	Right-handed 310
Helix 83	AJ2	C	647	660	Right-handed alpha
Helix 84	AJ3	C	660	673	Right-handed alpha
Helix 85	AJ4	C	680	695	Right-handed alpha
Helix 86	AJ5	C	697	721	Right-handed alpha
Helix 87	AJ6	C	727	740	Right-handed alpha
Helix 88	AJ7	C	741	748	Right-handed alpha
Helix 89	AJ8	C	765	769	Right-handed 310
Helix 90	AJ9	C	789	793	Right-handed 310
Helix 91	AK1	C	807	827	Right-handed alpha
Helix 92	AK2	C	857	862	Right-handed alpha
Helix 93	AK3	C	875	885	Right-handed alpha
Helix 94	AK4	C	887	912	Right-handed alpha
Helix 95	AK5	C	956	965	Right-handed alpha
Helix 96	AK6	C	970	973	Right-handed 310
Helix 97	AK7	C	974	993	Right-handed alpha
Helix 98	AK8	C	994	1004	Right-handed alpha
Helix 99	AK9	C	1005	1009	Right-handed 310
Helix 100	AL1	C	1015	1026	Right-handed alpha
Helix 101	AL2	C	1031	1046	Right-handed alpha
Helix 102	AL3	D	341	347	Right-handed alpha
Helix 103	AL4	D	400	410	Right-handed alpha
Helix 104	AL5	D	430	434	Right-handed 310
Helix 105	AL6	D	441	515	Right-handed alpha
Helix 106	AL7	D	517	586	Right-handed alpha
Helix 107	AL8	D	590	598	Right-handed alpha

There are 19 sheets in PDB entry 8V8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	37	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	98	102	parallel
Strand 4	A	69	73	anti-parallel
Strand 5	A	79	82	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	212	first strand
Strand 2	A	189	198	anti-parallel
Strand 3	A	284	289	parallel
Strand 4	A	250	254	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	326	first strand
Strand 2	A	483	485	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	392	first strand
Strand 2	A	333	341	anti-parallel
Strand 3	A	472	477	anti-parallel
Strand 4	A	439	444	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	353	362	anti-parallel
Strand 3	A	376	377	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	372	first strand
Strand 2	A	353	362	anti-parallel
Strand 3	A	400	410	anti-parallel
Strand 4	A	418	428	anti-parallel
Strand 5	A	446	447	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	752	first strand
Strand 2	A	760	761	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	771	first strand
Strand 2	A	779	784	anti-parallel
Strand 3	A	796	803	anti-parallel
Strand 4	A	845	849	anti-parallel
Strand 5	A	838	842	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	854	856	first strand
Strand 2	A	921	924	anti-parallel
Strand 3	A	929	931	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	37	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	98	102	parallel
Strand 4	C	69	73	anti-parallel
Strand 5	C	79	82	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	212	first strand
Strand 2	C	189	198	anti-parallel
Strand 3	C	284	289	parallel
Strand 4	C	250	254	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	326	first strand
Strand 2	C	483	485	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	392	first strand
Strand 2	C	333	341	anti-parallel
Strand 3	C	472	477	anti-parallel
Strand 4	C	439	444	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	366	first strand
Strand 2	C	353	362	anti-parallel
Strand 3	C	376	377	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	372	first strand
Strand 2	C	353	362	anti-parallel
Strand 3	C	400	409	anti-parallel
Strand 4	C	419	428	anti-parallel
Strand 5	C	446	447	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	751	752	first strand
Strand 2	C	760	761	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	770	771	first strand
Strand 2	C	779	784	anti-parallel
Strand 3	C	796	803	anti-parallel
Strand 4	C	845	849	anti-parallel
Strand 5	C	838	842	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	854	856	first strand
Strand 2	C	921	924	anti-parallel
Strand 3	C	929	931	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	359	first strand
Strand 2	D	368	374	anti-parallel
Strand 3	D	377	386	anti-parallel
Strand 4	D	389	391	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V8V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8V