Analysis of interatomic Contacts of Structural Units in PDB entry:
8V8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V8Y entry

There are 2 chains in PDB entry 8V8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ALA 203
A
 LEU 205GLY 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8V8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 32Right-handed alpha
Helix 2
AA2
A
46 52Right-handed 310
Helix 3
AA3
A
64 71Right-handed alpha
Helix 4
AA4
A
84 93Right-handed alpha
Helix 5
AA5
A
99 108Right-handed alpha
Helix 6
AA6
A
120 135Right-handed alpha
Helix 7
AA7
A
148 153Right-handed 310
Helix 8
AA8
A
165 171Right-handed alpha
Helix 9
AA9
A
189 193Right-handed 310
Helix 10
AB1
A
196 206Right-handed alpha
Helix 11
AB2
A
207 209Right-handed 310
Helix 12
AB3
A
220 224Right-handed 310
Helix 13
AB4
A
265 267Right-handed 310
Helix 14
AB5
A
271 289Right-handed alpha
Helix 15
AB6
A
291 302Right-handed alpha
Helix 16
AB7
A
328 337Right-handed alpha
Helix 17
AB8
A
358 365Right-handed 310
Helix 18
AB9
A
378 384Right-handed alpha
Helix 19
AC1
A
385 388Right-handed 310
Helix 20
AC2
A
395 404Right-handed alpha
Helix 21
AC3
A
405 407Right-handed 310
Helix 22
AC4
A
427 443Right-handed alpha
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There are 4 sheets in PDB entry 8V8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
38 41parallel
Strand 3
A
14 17parallel
Strand 4
A
73 76parallel
Strand 5
A
96 98parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
159 163parallel
Strand 3
A
112 116parallel
Strand 4
A
179 182parallel
Strand 5
A
214 217parallel
Strand 6
A
233 236parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 248first strand
Strand 2
A
251 256anti-parallel
Strand 3
A
259 263anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 315first strand
Strand 2
A
318 322anti-parallel
Strand 3
A
412 415parallel
Strand 4
A
345 350parallel
Strand 5
A
370 375parallel
Strand 6
A
390 392parallel
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