Analysis of interatomic Contacts of Structural Units in PDB entry:
8V95


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V95 entry

There are 2 chains in PDB entry 8V95 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 227VAL 527
B
 PHE 227VAL 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8V95. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
233 237Right-handed 310
Helix 2
AA2
A
279 283Right-handed 310
Helix 3
AA3
A
361 364Right-handed 310
Helix 4
AA4
A
451 462Right-handed alpha
Helix 5
AA5
B
233 237Right-handed 310
Helix 6
AA6
B
279 283Right-handed 310
Helix 7
AA7
B
361 364Right-handed 310
Helix 8
AA8
B
451 462Right-handed alpha
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There are 6 sheets in PDB entry 8V95. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 448first strand
Strand 2
A
426 434anti-parallel
Strand 3
A
248 252anti-parallel
Strand 4
A
502 504anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 448first strand
Strand 2
A
426 434anti-parallel
Strand 3
A
493 497anti-parallel
Strand 4
A
482 489anti-parallel
Strand 5
A
469 475anti-parallel
Strand 6
A
511 518anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
440 441first strand
Strand 2
A
345 354anti-parallel
Strand 3
A
366 370anti-parallel
Strand 4
A
301 307anti-parallel
Strand 5
A
286 293anti-parallel
Strand 6
A
381 390anti-parallel
Strand 7
A
332 340anti-parallel
Strand 8
A
345 354anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 441first strand
Strand 2
B
345 354anti-parallel
Strand 3
B
366 370anti-parallel
Strand 4
B
301 307anti-parallel
Strand 5
B
286 294anti-parallel
Strand 6
B
381 390anti-parallel
Strand 7
B
332 340anti-parallel
Strand 8
B
345 354anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 448first strand
Strand 2
B
426 434anti-parallel
Strand 3
B
248 251anti-parallel
Strand 4
B
502 504anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 448first strand
Strand 2
B
426 434anti-parallel
Strand 3
B
493 497anti-parallel
Strand 4
B
482 489anti-parallel
Strand 5
B
469 475anti-parallel
Strand 6
B
511 518anti-parallel
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