Analysis of interatomic Contacts of Structural Units in PDB entry:
8V96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V96 entry

There are 2 chains in PDB entry 8V96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 225PRO 525
B
 LYS 225PRO 525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8V96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
233 237Right-handed 310
Helix 2
AA2
A
279 283Right-handed 310
Helix 3
AA3
A
360 363Right-handed 310
Helix 4
AA4
A
450 461Right-handed alpha
Helix 5
AA5
B
233 237Right-handed 310
Helix 6
AA6
B
279 283Right-handed 310
Helix 7
AA7
B
360 363Right-handed 310
Helix 8
AA8
B
450 461Right-handed alpha
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There are 6 sheets in PDB entry 8V96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 447first strand
Strand 2
A
425 433anti-parallel
Strand 3
A
248 252anti-parallel
Strand 4
A
501 503anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 447first strand
Strand 2
A
425 433anti-parallel
Strand 3
A
492 496anti-parallel
Strand 4
A
481 488anti-parallel
Strand 5
A
468 474anti-parallel
Strand 6
A
510 517anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 353first strand
Strand 2
A
330 338anti-parallel
Strand 3
A
380 388anti-parallel
Strand 4
A
286 293anti-parallel
Strand 5
A
300 305anti-parallel
Strand 6
A
365 368anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 447first strand
Strand 2
B
425 433anti-parallel
Strand 3
B
248 252anti-parallel
Strand 4
B
501 503anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 447first strand
Strand 2
B
425 433anti-parallel
Strand 3
B
492 496anti-parallel
Strand 4
B
481 488anti-parallel
Strand 5
B
468 474anti-parallel
Strand 6
B
510 517anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 353first strand
Strand 2
B
330 338anti-parallel
Strand 3
B
380 388anti-parallel
Strand 4
B
286 293anti-parallel
Strand 5
B
300 305anti-parallel
Strand 6
B
365 368anti-parallel
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