Analysis of interatomic Contacts of Structural Units in PDB entry:
8V9A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V9A entry

There are 2 chains in PDB entry 8V9A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 225MET 533
B
 THR 225MET 533
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8V9A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
234 238Right-handed 310
Helix 2
AA2
A
280 284Right-handed 310
Helix 3
AA3
A
369 372Right-handed 310
Helix 4
AA4
A
457 468Right-handed alpha
Helix 5
AA5
B
234 238Right-handed 310
Helix 6
AA6
B
280 284Right-handed 310
Helix 7
AA7
B
369 372Right-handed 310
Helix 8
AA8
B
457 468Right-handed alpha
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There are 6 sheets in PDB entry 8V9A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 252first strand
Strand 2
A
432 440anti-parallel
Strand 3
A
451 454anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 252first strand
Strand 2
A
432 440anti-parallel
Strand 3
A
499 503anti-parallel
Strand 4
A
488 495anti-parallel
Strand 5
A
475 481anti-parallel
Strand 6
A
517 524anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 294first strand
Strand 2
A
302 307anti-parallel
Strand 3
A
374 379anti-parallel
Strand 4
A
354 362anti-parallel
Strand 5
A
333 341anti-parallel
Strand 6
A
389 397anti-parallel
Strand 7
A
287 294anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 447first strand
Strand 2
B
353 362anti-parallel
Strand 3
B
374 379anti-parallel
Strand 4
B
302 307anti-parallel
Strand 5
B
287 294anti-parallel
Strand 6
B
389 397anti-parallel
Strand 7
B
333 341anti-parallel
Strand 8
B
353 362anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 252first strand
Strand 2
B
432 440anti-parallel
Strand 3
B
451 454anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 252first strand
Strand 2
B
432 440anti-parallel
Strand 3
B
499 503anti-parallel
Strand 4
B
488 495anti-parallel
Strand 5
B
475 481anti-parallel
Strand 6
B
517 524anti-parallel
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