Analysis of interatomic Contacts of Structural Units in PDB entry:
8V9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V9C entry

There are 2 chains in PDB entry 8V9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 56MET 275
B
 CYS 56ALA 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8V9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 108Right-handed alpha
Helix 2
AA2
A
117 123Right-handed alpha
Helix 3
AA3
A
123 134Right-handed alpha
Helix 4
AA4
A
147 167Right-handed alpha
Helix 5
AA5
A
171 184Right-handed alpha
Helix 6
AA6
A
200 223Right-handed alpha
Helix 7
AA7
B
93 108Right-handed alpha
Helix 8
AA8
B
123 134Right-handed alpha
Helix 9
AA9
B
145 167Right-handed alpha
Helix 10
AB1
B
171 186Right-handed alpha
Helix 11
AB2
B
195 223Right-handed alpha
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There are 6 sheets in PDB entry 8V9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
87 89anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
136 137parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 261first strand
Strand 2
A
248 252anti-parallel
Strand 3
A
235 243anti-parallel
Strand 4
A
225 228anti-parallel
Strand 5
A
265 267anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 88first strand
Strand 2
B
72 78anti-parallel
Strand 3
B
61 67anti-parallel
Strand 4
B
112 114parallel
Strand 5
B
136 137parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 226first strand
Strand 2
B
266 268anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 245first strand
Strand 2
B
248 252anti-parallel
Strand 3
B
257 260anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il