Analysis of interatomic Contacts of Structural Units in PDB entry:
8V9D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V9D entry

There are 10 chains in PDB entry 8V9D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 32	PRO 254
I	GLN 1	CYS 228
J	GLU 1	CYS 215
B	GLN 32	PRO 254
K	GLN 1	CYS 228
L	GLU 1	CYS 215
C	GLN 32	PRO 254
M	GLN 1	CYS 228
N	GLU 1	CYS 215
D	GLN 32	PRO 254

There are 57 helices in PDB entry 8V9D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	55	Right-handed alpha
Helix 2	AA2	A	69	93	Right-handed alpha
Helix 3	AA3	A	97	107	Right-handed alpha
Helix 4	AA4	A	111	137	Right-handed alpha
Helix 5	AA5	A	155	178	Right-handed alpha
Helix 6	AA6	A	188	205	Right-handed alpha
Helix 7	AA7	A	213	225	Right-handed alpha
Helix 8	AA8	A	231	251	Right-handed alpha
Helix 9	AA9	I	88	92	Right-handed 310
Helix 10	AB1	I	139	141	Right-handed 310
Helix 11	AB2	I	168	170	Right-handed 310
Helix 12	AB3	I	199	201	Right-handed 310
Helix 13	AB4	J	29	32	Right-handed 310
Helix 14	AB5	J	80	84	Right-handed 310
Helix 15	AB6	J	122	128	Right-handed alpha
Helix 16	AB7	J	184	190	Right-handed alpha
Helix 17	AB8	B	33	55	Right-handed alpha
Helix 18	AB9	B	69	93	Right-handed alpha
Helix 19	AC1	B	97	107	Right-handed alpha
Helix 20	AC2	B	111	137	Right-handed alpha
Helix 21	AC3	B	155	178	Right-handed alpha
Helix 22	AC4	B	188	205	Right-handed alpha
Helix 23	AC5	B	213	225	Right-handed alpha
Helix 24	AC6	B	231	251	Right-handed alpha
Helix 25	AC7	K	63	66	Right-handed 310
Helix 26	AC8	K	88	92	Right-handed 310
Helix 27	AC9	K	139	141	Right-handed 310
Helix 28	AD1	K	168	170	Right-handed 310
Helix 29	AD2	K	199	201	Right-handed 310
Helix 30	AD3	L	29	32	Right-handed 310
Helix 31	AD4	L	80	84	Right-handed 310
Helix 32	AD5	L	122	128	Right-handed alpha
Helix 33	AD6	L	184	190	Right-handed alpha
Helix 34	AD7	C	33	55	Right-handed alpha
Helix 35	AD8	C	69	93	Right-handed alpha
Helix 36	AD9	C	97	107	Right-handed alpha
Helix 37	AE1	C	111	137	Right-handed alpha
Helix 38	AE2	C	155	178	Right-handed alpha
Helix 39	AE3	C	188	205	Right-handed alpha
Helix 40	AE4	C	213	225	Right-handed alpha
Helix 41	AE5	C	231	251	Right-handed alpha
Helix 42	AE6	M	88	92	Right-handed 310
Helix 43	AE7	M	139	141	Right-handed 310
Helix 44	AE8	M	168	170	Right-handed 310
Helix 45	AE9	M	199	201	Right-handed 310
Helix 46	AF1	N	29	32	Right-handed 310
Helix 47	AF2	N	80	84	Right-handed 310
Helix 48	AF3	N	122	128	Right-handed alpha
Helix 49	AF4	N	184	190	Right-handed alpha
Helix 50	AF5	D	33	55	Right-handed alpha
Helix 51	AF6	D	69	93	Right-handed alpha
Helix 52	AF7	D	97	107	Right-handed alpha
Helix 53	AF8	D	111	137	Right-handed alpha
Helix 54	AF9	D	155	178	Right-handed alpha
Helix 55	AG1	D	188	205	Right-handed alpha
Helix 56	AG2	D	213	225	Right-handed alpha
Helix 57	AG3	D	231	251	Right-handed alpha

There are 30 sheets in PDB entry 8V9D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	79	84	anti-parallel
Strand 4	I	71	74	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	119	123	parallel
Strand 3	I	93	100	anti-parallel
Strand 4	I	35	41	anti-parallel
Strand 5	I	48	53	anti-parallel
Strand 6	I	59	61	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	134	136	first strand
Strand 2	I	147	157	anti-parallel
Strand 3	I	188	197	anti-parallel
Strand 4	I	175	177	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	143	144	first strand
Strand 2	I	147	157	anti-parallel
Strand 3	I	188	197	anti-parallel
Strand 4	I	181	182	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	163	166	first strand
Strand 2	I	207	212	anti-parallel
Strand 3	I	217	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	71	76	anti-parallel
Strand 4	J	63	68	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	104	107	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	54	55	first strand
Strand 2	J	47	50	anti-parallel
Strand 3	J	34	39	anti-parallel
Strand 4	J	86	91	anti-parallel
Strand 5	J	98	99	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	115	119	first strand
Strand 2	J	130	138	anti-parallel
Strand 3	J	176	183	anti-parallel
Strand 4	J	160	164	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	154	156	first strand
Strand 2	J	146	151	anti-parallel
Strand 3	J	192	198	anti-parallel
Strand 4	J	206	211	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	79	84	anti-parallel
Strand 4	K	71	74	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	12	first strand
Strand 2	K	119	123	parallel
Strand 3	K	93	100	anti-parallel
Strand 4	K	35	41	anti-parallel
Strand 5	K	48	53	anti-parallel
Strand 6	K	59	61	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	134	136	first strand
Strand 2	K	147	157	anti-parallel
Strand 3	K	188	197	anti-parallel
Strand 4	K	175	177	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	143	144	first strand
Strand 2	K	147	157	anti-parallel
Strand 3	K	188	197	anti-parallel
Strand 4	K	181	182	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	163	166	first strand
Strand 2	K	207	212	anti-parallel
Strand 3	K	217	222	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	104	107	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	47	50	anti-parallel
Strand 3	L	34	39	anti-parallel
Strand 4	L	86	91	anti-parallel
Strand 5	L	98	99	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	130	138	anti-parallel
Strand 3	L	176	183	anti-parallel
Strand 4	L	160	164	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	156	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	206	211	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	7	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	79	84	anti-parallel
Strand 4	M	71	74	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	12	first strand
Strand 2	M	119	123	parallel
Strand 3	M	93	100	anti-parallel
Strand 4	M	35	41	anti-parallel
Strand 5	M	48	53	anti-parallel
Strand 6	M	59	61	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	134	136	first strand
Strand 2	M	147	157	anti-parallel
Strand 3	M	188	197	anti-parallel
Strand 4	M	175	177	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	143	144	first strand
Strand 2	M	147	157	anti-parallel
Strand 3	M	188	197	anti-parallel
Strand 4	M	181	182	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	163	166	first strand
Strand 2	M	207	212	anti-parallel
Strand 3	M	217	222	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	71	76	anti-parallel
Strand 4	N	63	68	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	104	107	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	54	55	first strand
Strand 2	N	47	50	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	86	91	anti-parallel
Strand 5	N	98	99	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	115	119	first strand
Strand 2	N	130	138	anti-parallel
Strand 3	N	176	183	anti-parallel
Strand 4	N	160	164	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	154	156	first strand
Strand 2	N	146	151	anti-parallel
Strand 3	N	192	198	anti-parallel
Strand 4	N	206	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V9D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V9D