Analysis of interatomic Contacts of Structural Units in PDB entry:
8V9H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V9H entry

There are 2 chains in PDB entry 8V9H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 20SER 284
B
 SER 19THR 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8V9H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 36Right-handed alpha
Helix 2
AA2
A
63 65Right-handed 310
Helix 3
AA3
A
66 80Right-handed alpha
Helix 4
AA4
A
92 96Right-handed 310
Helix 5
AA5
A
100 107Right-handed alpha
Helix 6
AA6
A
114 125Right-handed alpha
Helix 7
AA7
A
126 138Right-handed alpha
Helix 8
AA8
A
139 150Right-handed alpha
Helix 9
AA9
A
162 166Right-handed 310
Helix 10
AB1
A
177 191Right-handed alpha
Helix 11
AB2
A
195 208Right-handed alpha
Helix 12
AB3
A
215 220Right-handed alpha
Helix 13
AB4
A
263 284Right-handed alpha
Helix 14
AB5
B
20 36Right-handed alpha
Helix 15
AB6
B
63 65Right-handed 310
Helix 16
AB7
B
66 80Right-handed alpha
Helix 17
AB8
B
92 96Right-handed 310
Helix 18
AB9
B
100 107Right-handed alpha
Helix 19
AC1
B
114 125Right-handed alpha
Helix 20
AC2
B
126 138Right-handed alpha
Helix 21
AC3
B
138 150Right-handed alpha
Helix 22
AC4
B
162 166Right-handed 310
Helix 23
AC5
B
177 191Right-handed alpha
Helix 24
AC6
B
195 208Right-handed alpha
Helix 25
AC7
B
215 219Right-handed 310
Helix 26
AC8
B
263 285Right-handed alpha
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There are 6 sheets in PDB entry 8V9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
38 44anti-parallel
Strand 3
A
249 258anti-parallel
Strand 4
A
237 246anti-parallel
Strand 5
A
225 233anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
175 176anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
111 113anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
38 44anti-parallel
Strand 3
B
249 258anti-parallel
Strand 4
B
237 246anti-parallel
Strand 5
B
225 233anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
175 176anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
111 113anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il