Analysis of interatomic Contacts of Structural Units in PDB entry:
8V9Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V9Q entry

There are 3 chains in PDB entry 8V9Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 56	LEU 555
D	GLY 1	PRO 16
B	GLY 57	ILE 190

There are 34 helices in PDB entry 8V9Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	63	Right-handed 310
Helix 2	AA2	A	68	80	Right-handed alpha
Helix 3	AA3	A	85	90	Right-handed alpha
Helix 4	AA4	A	128	142	Right-handed alpha
Helix 5	AA5	A	144	146	Right-handed 310
Helix 6	AA6	A	160	163	Right-handed 310
Helix 7	AA7	A	164	172	Right-handed alpha
Helix 8	AA8	A	188	200	Right-handed alpha
Helix 9	AA9	A	218	229	Right-handed alpha
Helix 10	AB1	A	271	278	Right-handed alpha
Helix 11	AB2	A	300	306	Right-handed alpha
Helix 12	AB3	A	318	330	Right-handed alpha
Helix 13	AB4	A	363	374	Right-handed alpha
Helix 14	AB5	A	377	385	Right-handed alpha
Helix 15	AB6	A	387	391	Right-handed 310
Helix 16	AB7	A	396	407	Right-handed alpha
Helix 17	AB8	A	410	418	Right-handed alpha
Helix 18	AB9	A	463	467	Right-handed 310
Helix 19	AC1	A	501	504	Right-handed 310
Helix 20	AC2	A	543	546	Right-handed 310
Helix 21	AC3	B	75	83	Right-handed alpha
Helix 22	AC4	B	134	141	Right-handed alpha
Helix 23	AC5	B	144	146	Right-handed 310
Helix 24	AC6	B	170	174	Right-handed 310
Helix 25	AC7	B	188	194	Right-handed alpha
Helix 26	AC8	B	218	229	Right-handed alpha
Helix 27	AC9	B	271	278	Right-handed alpha
Helix 28	AD1	B	299	306	Right-handed alpha
Helix 29	AD2	B	318	330	Right-handed alpha
Helix 30	AD3	B	363	374	Right-handed alpha
Helix 31	AD4	B	375	377	Right-handed 310
Helix 32	AD5	B	378	385	Right-handed alpha
Helix 33	AD6	B	396	406	Right-handed alpha
Helix 34	AD7	B	410	418	Right-handed alpha

There are 16 sheets in PDB entry 8V9Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	183	first strand
Strand 2	A	148	156	parallel
Strand 3	A	118	124	parallel
Strand 4	A	204	209	parallel
Strand 5	A	296	299	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	333	344	anti-parallel
Strand 3	A	232	241	parallel
Strand 4	A	248	249	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	333	344	anti-parallel
Strand 3	A	286	287	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	259	first strand
Strand 2	A	265	269	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	432	first strand
Strand 2	A	468	471	anti-parallel
Strand 3	A	476	478	anti-parallel
Strand 4	A	481	484	anti-parallel
Strand 5	A	493	496	anti-parallel
Strand 6	A	452	453	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	436	first strand
Strand 2	A	548	549	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	444	first strand
Strand 2	A	455	458	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	508	first strand
Strand 2	A	515	517	anti-parallel
Strand 3	A	522	525	anti-parallel
Strand 4	A	536	538	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	152	first strand
Strand 2	B	118	121	parallel
Strand 3	B	204	204	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	213	first strand
Strand 2	B	333	344	anti-parallel
Strand 3	B	236	241	parallel
Strand 4	B	248	249	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	333	344	parallel
Strand 3	B	286	287	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	256	first strand
Strand 2	B	264	269	anti-parallel
Strand 3	B	259	260	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	432	first strand
Strand 2	B	468	471	anti-parallel
Strand 3	B	476	478	anti-parallel
Strand 4	B	481	484	anti-parallel
Strand 5	B	493	496	anti-parallel
Strand 6	B	452	453	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	436	first strand
Strand 2	B	548	549	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	444	first strand
Strand 2	B	455	458	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	506	507	first strand
Strand 2	B	516	517	anti-parallel
Strand 3	B	522	525	anti-parallel
Strand 4	B	536	539	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V9Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V9Q