Analysis of interatomic Contacts of Structural Units in PDB entry:
8VA1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VA1 entry

There are 4 chains in PDB entry 8VA1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	GLY 561
B	VAL 2	GLY 561
C	VAL 2	GLY 561
D	VAL 2	GLY 561

There are103 helices in PDB entry 8VA1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	93	102	Right-handed alpha
Helix 3	AA3	A	104	106	Right-handed 310
Helix 4	AA4	A	107	113	Right-handed alpha
Helix 5	AA5	A	116	125	Right-handed alpha
Helix 6	AA6	A	126	129	Right-handed 310
Helix 7	AA7	A	135	137	Right-handed 310
Helix 8	AA8	A	170	207	Right-handed alpha
Helix 9	AA9	A	225	237	Right-handed alpha
Helix 10	AB1	A	260	272	Right-handed alpha
Helix 11	AB2	A	283	287	Right-handed 310
Helix 12	AB3	A	308	313	Right-handed 310
Helix 13	AB4	A	338	348	Right-handed alpha
Helix 14	AB5	A	350	352	Right-handed 310
Helix 15	AB6	A	359	367	Right-handed 310
Helix 16	AB7	A	368	382	Right-handed alpha
Helix 17	AB8	A	413	425	Right-handed alpha
Helix 18	AB9	A	461	465	Right-handed 310
Helix 19	AC1	A	475	481	Right-handed alpha
Helix 20	AC2	A	482	484	Right-handed 310
Helix 21	AC3	A	493	501	Right-handed alpha
Helix 22	AC4	A	506	511	Right-handed alpha
Helix 23	AC5	A	518	528	Right-handed alpha
Helix 24	AC6	A	532	534	Right-handed 310
Helix 25	AC7	A	535	544	Right-handed alpha
Helix 26	AC8	A	550	561	Right-handed alpha
Helix 27	AC9	B	93	101	Right-handed alpha
Helix 28	AD1	B	104	112	Right-handed alpha
Helix 29	AD2	B	116	125	Right-handed alpha
Helix 30	AD3	B	126	129	Right-handed 310
Helix 31	AD4	B	135	137	Right-handed 310
Helix 32	AD5	B	170	207	Right-handed alpha
Helix 33	AD6	B	225	237	Right-handed alpha
Helix 34	AD7	B	238	243	Right-handed alpha
Helix 35	AD8	B	258	272	Right-handed alpha
Helix 36	AD9	B	308	313	Right-handed 310
Helix 37	AE1	B	338	348	Right-handed alpha
Helix 38	AE2	B	359	366	Right-handed 310
Helix 39	AE3	B	367	382	Right-handed alpha
Helix 40	AE4	B	383	387	Right-handed 310
Helix 41	AE5	B	408	412	Right-handed 310
Helix 42	AE6	B	413	423	Right-handed alpha
Helix 43	AE7	B	443	447	Right-handed 310
Helix 44	AE8	B	475	481	Right-handed alpha
Helix 45	AE9	B	482	484	Right-handed 310
Helix 46	AF1	B	493	501	Right-handed alpha
Helix 47	AF2	B	506	511	Right-handed alpha
Helix 48	AF3	B	518	527	Right-handed alpha
Helix 49	AF4	B	532	534	Right-handed 310
Helix 50	AF5	B	535	544	Right-handed alpha
Helix 51	AF6	B	550	560	Right-handed alpha
Helix 52	AF7	C	92	101	Right-handed alpha
Helix 53	AF8	C	104	112	Right-handed alpha
Helix 54	AF9	C	116	126	Right-handed alpha
Helix 55	AG1	C	127	129	Right-handed 310
Helix 56	AG2	C	135	137	Right-handed 310
Helix 57	AG3	C	170	205	Right-handed alpha
Helix 58	AG4	C	225	237	Right-handed alpha
Helix 59	AG5	C	258	272	Right-handed alpha
Helix 60	AG6	C	308	313	Right-handed 310
Helix 61	AG7	C	338	348	Right-handed alpha
Helix 62	AG8	C	350	352	Right-handed 310
Helix 63	AG9	C	359	367	Right-handed 310
Helix 64	AH1	C	368	382	Right-handed alpha
Helix 65	AH2	C	383	387	Right-handed 310
Helix 66	AH3	C	408	412	Right-handed 310
Helix 67	AH4	C	413	425	Right-handed alpha
Helix 68	AH5	C	443	450	Right-handed alpha
Helix 69	AH6	C	458	465	Right-handed 310
Helix 70	AH7	C	475	481	Right-handed alpha
Helix 71	AH8	C	482	484	Right-handed 310
Helix 72	AH9	C	493	501	Right-handed alpha
Helix 73	AI1	C	506	511	Right-handed alpha
Helix 74	AI2	C	518	529	Right-handed alpha
Helix 75	AI3	C	532	534	Right-handed 310
Helix 76	AI4	C	535	544	Right-handed alpha
Helix 77	AI5	C	550	561	Right-handed alpha
Helix 78	AI6	D	92	102	Right-handed alpha
Helix 79	AI7	D	107	113	Right-handed alpha
Helix 80	AI8	D	116	125	Right-handed alpha
Helix 81	AI9	D	126	129	Right-handed 310
Helix 82	AJ1	D	170	207	Right-handed alpha
Helix 83	AJ2	D	227	237	Right-handed alpha
Helix 84	AJ3	D	238	243	Right-handed alpha
Helix 85	AJ4	D	258	272	Right-handed alpha
Helix 86	AJ5	D	281	287	Right-handed 310
Helix 87	AJ6	D	308	313	Right-handed 310
Helix 88	AJ7	D	336	338	Right-handed 310
Helix 89	AJ8	D	339	348	Right-handed alpha
Helix 90	AJ9	D	359	365	Right-handed 310
Helix 91	AK1	D	367	382	Right-handed alpha
Helix 92	AK2	D	383	387	Right-handed 310
Helix 93	AK3	D	408	412	Right-handed 310
Helix 94	AK4	D	413	425	Right-handed alpha
Helix 95	AK5	D	443	447	Right-handed 310
Helix 96	AK6	D	458	463	Right-handed alpha
Helix 97	AK7	D	475	481	Right-handed alpha
Helix 98	AK8	D	482	484	Right-handed 310
Helix 99	AK9	D	493	501	Right-handed alpha
Helix 100	AL1	D	518	528	Right-handed alpha
Helix 101	AL2	D	532	534	Right-handed 310
Helix 102	AL3	D	535	544	Right-handed alpha
Helix 103	AL4	D	550	561	Right-handed alpha

There are 18 sheets in PDB entry 8VA1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	53	first strand
Strand 2	A	56	62	anti-parallel
Strand 3	A	17	24	anti-parallel
Strand 4	A	6	13	anti-parallel
Strand 5	A	90	91	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	33	38	anti-parallel
Strand 3	A	75	82	anti-parallel
Strand 4	A	87	88	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	33	38	anti-parallel
Strand 3	A	75	82	anti-parallel
Strand 4	A	156	163	anti-parallel
Strand 5	A	142	149	anti-parallel
Strand 6	A	130	133	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	249	first strand
Strand 2	A	212	217	parallel
Strand 3	A	274	277	parallel
Strand 4	A	294	298	parallel
Strand 5	A	331	333	parallel
Strand 6	A	354	355	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	452	first strand
Strand 2	A	428	430	parallel
Strand 3	A	391	393	parallel
Strand 4	A	468	470	parallel
Strand 5	A	487	490	parallel
Strand 6	A	514	516	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	17	25	anti-parallel
Strand 3	B	5	8	anti-parallel
Strand 4	B	87	91	parallel
Strand 5	B	75	81	anti-parallel
Strand 6	B	56	62	first strand
Strand 7	B	49	53	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	75	81	anti-parallel
Strand 4	B	87	91	anti-parallel
Strand 5	B	5	8	parallel
Strand 6	B	17	25	anti-parallel
Strand 7	B	156	163	first strand
Strand 8	B	142	149	anti-parallel
Strand 9	B	130	133	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	249	first strand
Strand 2	B	212	217	parallel
Strand 3	B	274	277	parallel
Strand 4	B	294	298	parallel
Strand 5	B	331	333	parallel
Strand 6	B	354	355	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	452	first strand
Strand 2	B	427	430	parallel
Strand 3	B	390	393	parallel
Strand 4	B	468	471	parallel
Strand 5	B	487	489	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	53	first strand
Strand 2	C	56	62	anti-parallel
Strand 3	C	17	25	anti-parallel
Strand 4	C	5	13	anti-parallel
Strand 5	C	90	91	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	38	first strand
Strand 2	C	75	82	anti-parallel
Strand 3	C	155	163	anti-parallel
Strand 4	C	142	150	anti-parallel
Strand 5	C	130	133	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	249	first strand
Strand 2	C	212	217	parallel
Strand 3	C	274	277	parallel
Strand 4	C	294	297	parallel
Strand 5	C	331	334	parallel
Strand 6	C	354	356	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	393	first strand
Strand 2	C	426	430	parallel
Strand 3	C	451	452	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	490	first strand
Strand 2	C	513	516	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	46	first strand
Strand 2	D	33	38	anti-parallel
Strand 3	D	75	82	anti-parallel
Strand 4	D	87	91	anti-parallel
Strand 5	D	5	13	parallel
Strand 6	D	17	25	anti-parallel
Strand 7	D	56	62	anti-parallel
Strand 8	D	49	53	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	46	first strand
Strand 2	D	33	38	anti-parallel
Strand 3	D	75	82	anti-parallel
Strand 4	D	156	163	anti-parallel
Strand 5	D	142	149	anti-parallel
Strand 6	D	130	133	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	249	first strand
Strand 2	D	212	217	parallel
Strand 3	D	274	277	parallel
Strand 4	D	294	297	parallel
Strand 5	D	331	333	parallel
Strand 6	D	354	355	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	450	452	first strand
Strand 2	D	426	430	parallel
Strand 3	D	389	393	parallel
Strand 4	D	469	470	parallel
Strand 5	D	487	490	parallel
Strand 6	D	514	516	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VA1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VA1