Analysis of interatomic Contacts of Structural Units in PDB entry:
8VA2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VA2 entry

There are 4 chains in PDB entry 8VA2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	GLU 3	VAL 437
b	GLU 3	VAL 437
g	GLU 4	PRO 441
h	GLU 4	PRO 441

There are 69 helices in PDB entry 8VA2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	10	28	Right-handed alpha
Helix 2	AA2	a	47	51	Right-handed 310
Helix 3	AA3	a	72	80	Right-handed alpha
Helix 4	AA4	a	110	113	Right-handed 310
Helix 5	AA5	a	114	129	Right-handed alpha
Helix 6	AA6	a	143	161	Right-handed alpha
Helix 7	AA7	a	182	198	Right-handed alpha
Helix 8	AA8	a	205	216	Right-handed alpha
Helix 9	AA9	a	223	244	Right-handed alpha
Helix 10	AB1	a	251	260	Right-handed alpha
Helix 11	AB2	a	278	283	Right-handed 310
Helix 12	AB3	a	287	297	Right-handed alpha
Helix 13	AB4	a	298	301	Right-handed 310
Helix 14	AB5	a	324	338	Right-handed alpha
Helix 15	AB6	a	382	402	Right-handed alpha
Helix 16	AB7	a	405	410	Right-handed alpha
Helix 17	AB8	a	414	436	Right-handed alpha
Helix 18	AB9	b	9	29	Right-handed alpha
Helix 19	AC1	b	48	51	Right-handed 310
Helix 20	AC2	b	71	81	Right-handed alpha
Helix 21	AC3	b	103	108	Right-handed alpha
Helix 22	AC4	b	110	129	Right-handed alpha
Helix 23	AC5	b	143	161	Right-handed alpha
Helix 24	AC6	b	182	195	Right-handed alpha
Helix 25	AC7	b	205	216	Right-handed alpha
Helix 26	AC8	b	223	244	Right-handed alpha
Helix 27	AC9	b	251	259	Right-handed alpha
Helix 28	AD1	b	277	282	Right-handed alpha
Helix 29	AD2	b	287	297	Right-handed alpha
Helix 30	AD3	b	324	338	Right-handed alpha
Helix 31	AD4	b	382	402	Right-handed alpha
Helix 32	AD5	b	405	410	Right-handed alpha
Helix 33	AD6	b	414	437	Right-handed alpha
Helix 34	AD7	g	10	29	Right-handed alpha
Helix 35	AD8	g	71	78	Right-handed alpha
Helix 36	AD9	g	82	86	Right-handed 310
Helix 37	AE1	g	103	114	Right-handed alpha
Helix 38	AE2	g	114	128	Right-handed alpha
Helix 39	AE3	g	143	159	Right-handed alpha
Helix 40	AE4	g	183	198	Right-handed alpha
Helix 41	AE5	g	206	217	Right-handed alpha
Helix 42	AE6	g	224	245	Right-handed alpha
Helix 43	AE7	g	252	259	Right-handed alpha
Helix 44	AE8	g	289	297	Right-handed alpha
Helix 45	AE9	g	329	344	Right-handed alpha
Helix 46	AF1	g	384	400	Right-handed alpha
Helix 47	AF2	g	407	411	Right-handed 310
Helix 48	AF3	g	418	439	Right-handed alpha
Helix 49	AF4	h	11	29	Right-handed alpha
Helix 50	AF5	h	39	44	Right-handed 310
Helix 51	AF6	h	47	51	Right-handed 310
Helix 52	AF7	h	70	79	Right-handed alpha
Helix 53	AF8	h	82	86	Right-handed 310
Helix 54	AF9	h	87	91	Right-handed 310
Helix 55	AG1	h	103	129	Right-handed alpha
Helix 56	AG2	h	143	161	Right-handed alpha
Helix 57	AG3	h	183	199	Right-handed alpha
Helix 58	AG4	h	207	219	Right-handed alpha
Helix 59	AG5	h	223	245	Right-handed alpha
Helix 60	AG6	h	252	259	Right-handed alpha
Helix 61	AG7	h	263	267	Right-handed 310
Helix 62	AG8	h	280	285	Right-handed alpha
Helix 63	AG9	h	289	299	Right-handed alpha
Helix 64	AH1	h	300	303	Right-handed 310
Helix 65	AH2	h	329	344	Right-handed alpha
Helix 66	AH3	h	384	402	Right-handed alpha
Helix 67	AH4	h	405	410	Right-handed alpha
Helix 68	AH5	h	411	416	Right-handed alpha
Helix 69	AH6	h	418	440	Right-handed alpha

There are 13 sheets in PDB entry 8VA2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	65	68	first strand
Strand 2	a	5	9	parallel
Strand 3	a	134	138	parallel
Strand 4	a	165	169	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	53	55	first strand
Strand 2	a	61	63	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	353	356	first strand
Strand 2	a	317	320	parallel
Strand 3	a	375	377	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	65	66	first strand
Strand 2	b	5	8	parallel
Strand 3	b	134	138	parallel
Strand 4	b	165	169	parallel
Strand 5	b	200	201	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	53	55	first strand
Strand 2	b	61	63	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	269	270	first strand
Strand 2	b	377	380	anti-parallel
Strand 3	b	314	317	anti-parallel
Strand 4	b	351	352	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	320	321	first strand
Strand 2	b	373	374	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	64	66	first strand
Strand 2	g	5	9	parallel
Strand 3	g	134	140	parallel
Strand 4	g	165	171	parallel
Strand 5	g	201	202	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	52	54	first strand
Strand 2	g	60	62	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	270	273	first strand
Strand 2	g	376	381	anti-parallel
Strand 3	g	317	319	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	270	273	first strand
Strand 2	g	376	381	anti-parallel
Strand 3	g	321	324	anti-parallel
Strand 4	g	357	360	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	66	67	first strand
Strand 2	h	6	10	parallel
Strand 3	h	134	138	parallel
Strand 4	h	165	172	parallel
Strand 5	h	201	206	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	357	361	first strand
Strand 2	h	317	325	parallel
Strand 3	h	374	381	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VA2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VA2