Analysis of interatomic Contacts of Structural Units in PDB entry:
8VA3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VA3 entry

There are 2 chains in PDB entry 8VA3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 18	ARG 780
B	VAL 20	THR 539

There are 60 helices in PDB entry 8VA3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	39	Right-handed alpha
Helix 2	AA2	A	42	50	Right-handed alpha
Helix 3	AA3	A	56	59	Right-handed 310
Helix 4	AA4	A	60	68	Right-handed alpha
Helix 5	AA5	A	73	81	Right-handed alpha
Helix 6	AA6	A	92	96	Right-handed 310
Helix 7	AA7	A	99	118	Right-handed alpha
Helix 8	AA8	A	143	151	Right-handed alpha
Helix 9	AA9	A	152	169	Right-handed alpha
Helix 10	AB1	A	190	194	Right-handed 310
Helix 11	AB2	A	198	215	Right-handed alpha
Helix 12	AB3	A	251	258	Right-handed alpha
Helix 13	AB4	A	259	269	Right-handed alpha
Helix 14	AB5	A	289	294	Right-handed alpha
Helix 15	AB6	A	312	320	Right-handed alpha
Helix 16	AB7	A	326	338	Right-handed alpha
Helix 17	AB8	A	348	360	Right-handed alpha
Helix 18	AB9	A	364	382	Right-handed alpha
Helix 19	AC1	A	401	416	Right-handed alpha
Helix 20	AC2	A	423	425	Right-handed 310
Helix 21	AC3	A	443	449	Right-handed alpha
Helix 22	AC4	A	459	464	Right-handed alpha
Helix 23	AC5	A	469	479	Right-handed alpha
Helix 24	AC6	A	508	519	Right-handed alpha
Helix 25	AC7	A	533	537	Right-handed 310
Helix 26	AC8	A	544	556	Right-handed alpha
Helix 27	AC9	A	576	580	Right-handed 310
Helix 28	AD1	A	592	602	Right-handed alpha
Helix 29	AD2	A	628	632	Right-handed 310
Helix 30	AD3	A	644	646	Right-handed 310
Helix 31	AD4	A	738	741	Right-handed 310
Helix 32	AD5	B	27	41	Right-handed alpha
Helix 33	AD6	B	42	50	Right-handed alpha
Helix 34	AD7	B	56	59	Right-handed 310
Helix 35	AD8	B	73	81	Right-handed alpha
Helix 36	AD9	B	92	96	Right-handed 310
Helix 37	AE1	B	99	118	Right-handed alpha
Helix 38	AE2	B	143	150	Right-handed alpha
Helix 39	AE3	B	152	169	Right-handed alpha
Helix 40	AE4	B	190	194	Right-handed 310
Helix 41	AE5	B	198	215	Right-handed alpha
Helix 42	AE6	B	251	258	Right-handed alpha
Helix 43	AE7	B	260	269	Right-handed alpha
Helix 44	AE8	B	289	294	Right-handed alpha
Helix 45	AE9	B	312	320	Right-handed alpha
Helix 46	AF1	B	326	338	Right-handed alpha
Helix 47	AF2	B	348	360	Right-handed alpha
Helix 48	AF3	B	364	382	Right-handed alpha
Helix 49	AF4	B	401	416	Right-handed alpha
Helix 50	AF5	B	423	425	Right-handed 310
Helix 51	AF6	B	443	449	Right-handed alpha
Helix 52	AF7	B	459	464	Right-handed alpha
Helix 53	AF8	B	469	479	Right-handed alpha
Helix 54	AF9	B	508	518	Right-handed alpha
Helix 55	AG1	B	533	537	Right-handed 310
Helix 56	AG2	B	544	556	Right-handed alpha
Helix 57	AG3	B	576	580	Right-handed 310
Helix 58	AG4	B	592	602	Right-handed alpha
Helix 59	AG5	B	628	632	Right-handed 310
Helix 60	AG6	B	738	741	Right-handed 310

There are 18 sheets in PDB entry 8VA3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	A	88	90	parallel
Strand 3	A	51	54	parallel
Strand 4	A	342	343	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	233	first strand
Strand 2	A	273	276	parallel
Strand 3	A	306	308	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	284	285	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	421	first strand
Strand 2	A	582	587	anti-parallel
Strand 3	A	561	566	parallel
Strand 4	A	521	527	parallel
Strand 5	A	434	437	parallel
Strand 6	A	483	485	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	490	first strand
Strand 2	A	505	506	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	615	616	first strand
Strand 2	A	648	650	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	669	first strand
Strand 2	A	678	687	anti-parallel
Strand 3	A	728	736	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	673	first strand
Strand 2	A	763	769	parallel
Strand 3	A	754	760	anti-parallel
Strand 4	A	693	703	anti-parallel
Strand 5	A	714	723	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	743	first strand
Strand 2	A	749	751	anti-parallel
Strand 3	A	773	774	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	123	126	parallel
Strand 3	B	88	90	parallel
Strand 4	B	51	54	parallel
Strand 5	B	342	343	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	233	first strand
Strand 2	B	273	276	parallel
Strand 3	B	306	308	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	284	285	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	421	first strand
Strand 2	B	582	587	anti-parallel
Strand 3	B	561	566	parallel
Strand 4	B	521	527	parallel
Strand 5	B	434	437	parallel
Strand 6	B	483	485	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	490	first strand
Strand 2	B	505	506	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	615	616	first strand
Strand 2	B	648	650	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	661	669	first strand
Strand 2	B	678	687	anti-parallel
Strand 3	B	728	736	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	672	673	first strand
Strand 2	B	763	769	parallel
Strand 3	B	754	760	anti-parallel
Strand 4	B	693	703	anti-parallel
Strand 5	B	714	723	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	742	743	first strand
Strand 2	B	749	751	anti-parallel
Strand 3	B	773	774	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VA3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VA3