Analysis of interatomic Contacts of Structural Units in PDB entry:
8VA4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VA4 entry

There is 1 chain in PDB entry 8VA4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 128ARG 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 8VA4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
352 357Right-handed alpha
Helix 2
AA2
A
362 366Right-handed 310
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There are 3 sheets in PDB entry 8VA4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 143first strand
Strand 2
A
368 380anti-parallel
Strand 3
A
198 206anti-parallel
Strand 4
A
192 195anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
209 212parallel
Strand 3
A
198 206anti-parallel
Strand 4
A
368 380anti-parallel
Strand 5
A
224 231anti-parallel
Strand 6
A
302 309anti-parallel
Strand 7
A
313 318anti-parallel
Strand 8
A
321 327anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
214 217anti-parallel
Strand 3
A
343 351anti-parallel
Strand 4
A
238 246anti-parallel
Strand 5
A
258 263anti-parallel
Strand 6
A
271 277anti-parallel
Strand 7
A
289 294anti-parallel
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