Analysis of interatomic Contacts of Structural Units in PDB entry:
8VA7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VA7 entry

There are 2 chains in PDB entry 8VA7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 20	GLN 743
B	SER 17	LEU 742

There are 53 helices in PDB entry 8VA7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	26	Right-handed 310
Helix 2	AA2	A	30	42	Right-handed alpha
Helix 3	AA3	A	43	51	Right-handed alpha
Helix 4	AA4	A	103	111	Right-handed alpha
Helix 5	AA5	A	112	130	Right-handed alpha
Helix 6	AA6	A	150	154	Right-handed 310
Helix 7	AA7	A	158	175	Right-handed alpha
Helix 8	AA8	A	202	209	Right-handed alpha
Helix 9	AA9	A	211	220	Right-handed alpha
Helix 10	AB1	A	237	241	Right-handed 310
Helix 11	AB2	A	268	275	Right-handed alpha
Helix 12	AB3	A	295	299	Right-handed 310
Helix 13	AB4	A	302	311	Right-handed alpha
Helix 14	AB5	A	316	332	Right-handed alpha
Helix 15	AB6	A	346	361	Right-handed alpha
Helix 16	AB7	A	368	370	Right-handed 310
Helix 17	AB8	A	385	388	Right-handed 310
Helix 18	AB9	A	395	399	Right-handed 310
Helix 19	AC1	A	407	416	Right-handed alpha
Helix 20	AC2	A	449	463	Right-handed alpha
Helix 21	AC3	A	491	493	Right-handed 310
Helix 22	AC4	A	494	506	Right-handed alpha
Helix 23	AC5	A	523	527	Right-handed 310
Helix 24	AC6	A	539	550	Right-handed alpha
Helix 25	AC7	A	565	568	Right-handed 310
Helix 26	AC8	A	569	574	Right-handed alpha
Helix 27	AC9	A	599	606	Right-handed alpha
Helix 28	AD1	A	702	706	Right-handed 310
Helix 29	AD2	B	22	26	Right-handed 310
Helix 30	AD3	B	30	42	Right-handed alpha
Helix 31	AD4	B	43	51	Right-handed alpha
Helix 32	AD5	B	103	111	Right-handed alpha
Helix 33	AD6	B	112	130	Right-handed alpha
Helix 34	AD7	B	150	154	Right-handed 310
Helix 35	AD8	B	158	175	Right-handed alpha
Helix 36	AD9	B	202	209	Right-handed alpha
Helix 37	AE1	B	211	220	Right-handed alpha
Helix 38	AE2	B	237	241	Right-handed 310
Helix 39	AE3	B	268	275	Right-handed alpha
Helix 40	AE4	B	295	299	Right-handed 310
Helix 41	AE5	B	302	311	Right-handed alpha
Helix 42	AE6	B	316	332	Right-handed alpha
Helix 43	AE7	B	346	361	Right-handed alpha
Helix 44	AE8	B	368	370	Right-handed 310
Helix 45	AE9	B	395	399	Right-handed 310
Helix 46	AF1	B	407	417	Right-handed alpha
Helix 47	AF2	B	449	462	Right-handed alpha
Helix 48	AF3	B	494	506	Right-handed alpha
Helix 49	AF4	B	539	550	Right-handed alpha
Helix 50	AF5	B	565	568	Right-handed 310
Helix 51	AF6	B	569	574	Right-handed alpha
Helix 52	AF7	B	599	606	Right-handed alpha
Helix 53	AF8	B	702	706	Right-handed 310

There are 12 sheets in PDB entry 8VA7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	70	74	anti-parallel
Strand 3	A	134	136	parallel
Strand 4	A	179	182	parallel
Strand 5	A	225	228	parallel
Strand 6	A	258	261	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	197	200	parallel
Strand 3	A	588	591	parallel
Strand 4	A	580	581	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	366	first strand
Strand 2	A	529	532	anti-parallel
Strand 3	A	509	514	parallel
Strand 4	A	466	472	parallel
Strand 5	A	380	383	parallel
Strand 6	A	421	424	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	625	first strand
Strand 2	A	645	653	anti-parallel
Strand 3	A	694	701	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	636	637	first strand
Strand 2	A	734	743	parallel
Strand 3	A	721	728	anti-parallel
Strand 4	A	659	669	anti-parallel
Strand 5	A	680	689	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	710	first strand
Strand 2	A	715	717	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	70	73	anti-parallel
Strand 3	B	134	135	parallel
Strand 4	B	179	185	parallel
Strand 5	B	225	228	parallel
Strand 6	B	258	261	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	197	200	parallel
Strand 3	B	588	591	parallel
Strand 4	B	580	581	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	366	first strand
Strand 2	B	529	532	anti-parallel
Strand 3	B	509	514	parallel
Strand 4	B	466	472	parallel
Strand 5	B	380	383	parallel
Strand 6	B	421	424	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	623	625	first strand
Strand 2	B	645	653	anti-parallel
Strand 3	B	694	701	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	689	first strand
Strand 2	B	659	669	anti-parallel
Strand 3	B	722	728	anti-parallel
Strand 4	B	734	741	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	710	first strand
Strand 2	B	715	717	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VA7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VA7