Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VAF entry

There is 1 chain in PDB entry 8VAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ALA 582
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8VAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 15Right-handed alpha
Helix 2
AA2
A
15 31Right-handed alpha
Helix 3
AA3
A
35 56Right-handed alpha
Helix 4
AA4
A
59 64Right-handed alpha
Helix 5
AA5
A
65 75Right-handed alpha
Helix 6
AA6
A
84 92Right-handed alpha
Helix 7
AA7
A
96 105Right-handed alpha
Helix 8
AA8
A
119 130Right-handed alpha
Helix 9
AA9
A
130 146Right-handed alpha
Helix 10
AB1
A
150 169Right-handed alpha
Helix 11
AB2
A
174 179Right-handed alpha
Helix 12
AB3
A
179 223Right-handed alpha
Helix 13
AB4
A
227 247Right-handed alpha
Helix 14
AB5
A
250 267Right-handed alpha
Helix 15
AB6
A
268 271Right-handed 310
Helix 16
AB7
A
273 277Right-handed 310
Helix 17
AB8
A
282 291Right-handed alpha
Helix 18
AB9
A
314 322Right-handed alpha
Helix 19
AC1
A
322 338Right-handed alpha
Helix 20
AC2
A
342 360Right-handed alpha
Helix 21
AC3
A
365 371Right-handed alpha
Helix 22
AC4
A
372 375Right-handed 310
Helix 23
AC5
A
376 397Right-handed alpha
Helix 24
AC6
A
399 415Right-handed alpha
Helix 25
AC7
A
419 438Right-handed alpha
Helix 26
AC8
A
444 466Right-handed alpha
Helix 27
AC9
A
480 482Right-handed 310
Helix 28
AD1
A
483 491Right-handed alpha
Helix 29
AD2
A
503 508Right-handed alpha
Helix 30
AD3
A
511 516Right-handed alpha
Helix 31
AD4
A
517 536Right-handed alpha
Helix 32
AD5
A
540 558Right-handed alpha
Helix 33
AD6
A
563 581Right-handed alpha
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There are no sheets in PDB entry 8VAF
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