Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VAG entry

There are 2 chains in PDB entry 8VAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 6ASP 220
B
 MET 6LEU 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8VAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 19Right-handed alpha
Helix 2
AA2
A
20 23Right-handed 310
Helix 3
AA3
A
24 33Right-handed alpha
Helix 4
AA4
A
36 47Right-handed alpha
Helix 5
AA5
A
47 64Right-handed alpha
Helix 6
AA6
A
67 83Right-handed alpha
Helix 7
AA7
A
87 99Right-handed alpha
Helix 8
AA8
A
102 109Right-handed alpha
Helix 9
AA9
A
112 127Right-handed alpha
Helix 10
AB1
A
130 143Right-handed alpha
Helix 11
AB2
A
144 159Right-handed alpha
Helix 12
AB3
A
168 193Right-handed alpha
Helix 13
AB4
A
196 218Right-handed alpha
Helix 14
AB5
B
7 19Right-handed alpha
Helix 15
AB6
B
20 23Right-handed 310
Helix 16
AB7
B
24 33Right-handed alpha
Helix 17
AB8
B
36 63Right-handed alpha
Helix 18
AB9
B
67 83Right-handed alpha
Helix 19
AC1
B
87 99Right-handed alpha
Helix 20
AC2
B
102 109Right-handed alpha
Helix 21
AC3
B
112 127Right-handed alpha
Helix 22
AC4
B
130 143Right-handed alpha
Helix 23
AC5
B
144 160Right-handed alpha
Helix 24
AC6
B
164 167Right-handed 310
Helix 25
AC7
B
168 193Right-handed alpha
Helix 26
AC8
B
196 217Right-handed alpha
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There are no sheets in PDB entry 8VAG
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