Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VAH entry

There are 7 chains in PDB entry 8VAH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 695
B	MET 1	GLN 695
C	MET 1	GLN 695
G	A 6	A 14
D	A 2	A 4
E	A 2	A 4
F	A 2	A 4

There are 54 helices in PDB entry 8VAH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	103	Right-handed alpha
Helix 2	AA2	A	125	142	Right-handed alpha
Helix 3	AA3	A	166	171	Right-handed alpha
Helix 4	AA4	A	197	226	Right-handed alpha
Helix 5	AA5	A	239	251	Right-handed alpha
Helix 6	AA6	A	251	258	Right-handed alpha
Helix 7	AA7	A	262	285	Right-handed alpha
Helix 8	AA8	A	289	312	Right-handed alpha
Helix 9	AA9	A	358	362	Right-handed 310
Helix 10	AB1	A	397	412	Right-handed alpha
Helix 11	AB2	A	437	454	Right-handed alpha
Helix 12	AB3	A	483	487	Right-handed 310
Helix 13	AB4	A	515	541	Right-handed alpha
Helix 14	AB5	A	561	563	Right-handed 310
Helix 15	AB6	A	564	570	Right-handed alpha
Helix 16	AB7	A	573	584	Right-handed alpha
Helix 17	AB8	A	601	615	Right-handed alpha
Helix 18	AB9	A	661	665	Right-handed 310
Helix 19	AC1	A	689	694	Right-handed alpha
Helix 20	AC2	B	85	100	Right-handed alpha
Helix 21	AC3	B	125	142	Right-handed alpha
Helix 22	AC4	B	166	171	Right-handed alpha
Helix 23	AC5	B	197	227	Right-handed alpha
Helix 24	AC6	B	239	259	Right-handed alpha
Helix 25	AC7	B	262	285	Right-handed alpha
Helix 26	AC8	B	289	312	Right-handed alpha
Helix 27	AC9	B	397	412	Right-handed alpha
Helix 28	AD1	B	437	454	Right-handed alpha
Helix 29	AD2	B	483	487	Right-handed 310
Helix 30	AD3	B	515	541	Right-handed alpha
Helix 31	AD4	B	564	569	Right-handed alpha
Helix 32	AD5	B	570	572	Right-handed 310
Helix 33	AD6	B	573	583	Right-handed alpha
Helix 34	AD7	B	601	616	Right-handed alpha
Helix 35	AD8	B	650	654	Right-handed 310
Helix 36	AD9	B	661	665	Right-handed 310
Helix 37	AE1	B	689	695	Right-handed alpha
Helix 38	AE2	C	85	100	Right-handed alpha
Helix 39	AE3	C	125	142	Right-handed alpha
Helix 40	AE4	C	166	173	Right-handed alpha
Helix 41	AE5	C	197	227	Right-handed alpha
Helix 42	AE6	C	239	260	Right-handed alpha
Helix 43	AE7	C	262	285	Right-handed alpha
Helix 44	AE8	C	289	312	Right-handed alpha
Helix 45	AE9	C	358	362	Right-handed 310
Helix 46	AF1	C	397	413	Right-handed alpha
Helix 47	AF2	C	437	454	Right-handed alpha
Helix 48	AF3	C	482	489	Right-handed alpha
Helix 49	AF4	C	515	541	Right-handed alpha
Helix 50	AF5	C	561	570	Right-handed alpha
Helix 51	AF6	C	573	584	Right-handed alpha
Helix 52	AF7	C	601	617	Right-handed alpha
Helix 53	AF8	C	661	665	Right-handed 310
Helix 54	AF9	C	689	695	Right-handed alpha

There are 25 sheets in PDB entry 8VAH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	16	20	anti-parallel
Strand 3	A	29	35	anti-parallel
Strand 4	A	39	46	anti-parallel
Strand 5	A	111	119	anti-parallel
Strand 6	A	59	65	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	163	first strand
Strand 2	A	152	157	anti-parallel
Strand 3	A	176	181	anti-parallel
Strand 4	A	186	190	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	331	first strand
Strand 2	A	339	345	anti-parallel
Strand 3	A	348	355	anti-parallel
Strand 4	A	426	433	anti-parallel
Strand 5	A	377	381	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	366	first strand
Strand 2	A	371	374	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	464	first strand
Strand 2	A	495	497	anti-parallel
Strand 3	A	502	505	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	478	first strand
Strand 2	A	467	471	anti-parallel
Strand 3	A	491	492	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	554	559	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	586	589	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	629	633	first strand
Strand 2	A	636	639	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	10	first strand
Strand 2	B	15	20	anti-parallel
Strand 3	B	29	35	anti-parallel
Strand 4	B	38	46	anti-parallel
Strand 5	B	111	119	anti-parallel
Strand 6	B	59	65	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	180	181	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	162	first strand
Strand 2	B	154	157	anti-parallel
Strand 3	B	176	177	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	502	508	anti-parallel
Strand 3	B	491	497	anti-parallel
Strand 4	B	462	464	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	502	508	anti-parallel
Strand 3	B	491	497	anti-parallel
Strand 4	B	466	471	anti-parallel
Strand 5	B	474	479	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	331	first strand
Strand 2	B	340	345	anti-parallel
Strand 3	B	348	355	anti-parallel
Strand 4	B	425	433	anti-parallel
Strand 5	B	376	381	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	366	first strand
Strand 2	B	371	374	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	559	first strand
Strand 2	B	594	599	anti-parallel
Strand 3	B	586	589	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	629	632	first strand
Strand 2	B	637	639	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	16	20	anti-parallel
Strand 3	C	29	35	anti-parallel
Strand 4	C	38	46	anti-parallel
Strand 5	C	111	119	anti-parallel
Strand 6	C	59	60	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	16	20	anti-parallel
Strand 3	C	29	35	anti-parallel
Strand 4	C	38	46	anti-parallel
Strand 5	C	111	119	anti-parallel
Strand 6	C	63	65	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	163	first strand
Strand 2	C	150	157	anti-parallel
Strand 3	C	176	181	anti-parallel
Strand 4	C	186	192	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	331	first strand
Strand 2	C	339	345	anti-parallel
Strand 3	C	348	355	anti-parallel
Strand 4	C	425	433	anti-parallel
Strand 5	C	376	381	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	366	first strand
Strand 2	C	371	374	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	474	479	first strand
Strand 2	C	461	471	anti-parallel
Strand 3	C	491	498	anti-parallel
Strand 4	C	504	506	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	554	559	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	586	589	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	631	633	first strand
Strand 2	C	636	638	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VAH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAH