Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VAJ entry

There are 3 chains in PDB entry 8VAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 13ALA 861
E
 U 1 G 14
F
 A 6 A 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8VAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 74Right-handed alpha
Helix 2
AA2
A
133 141Right-handed alpha
Helix 3
AA3
A
158 170Right-handed alpha
Helix 4
AA4
A
170 175Right-handed alpha
Helix 5
AA5
A
230 240Right-handed alpha
Helix 6
AA6
A
252 264Right-handed alpha
Helix 7
AA7
A
309 318Right-handed alpha
Helix 8
AA8
A
358 370Right-handed alpha
Helix 9
AA9
A
372 387Right-handed alpha
Helix 10
AB1
A
388 391Right-handed 310
Helix 11
AB2
A
392 397Right-handed alpha
Helix 12
AB3
A
431 435Right-handed 310
Helix 13
AB4
A
464 482Right-handed alpha
Helix 14
AB5
A
498 500Right-handed 310
Helix 15
AB6
A
501 513Right-handed alpha
Helix 16
AB7
A
527 539Right-handed alpha
Helix 17
AB8
A
550 555Right-handed alpha
Helix 18
AB9
A
557 572Right-handed alpha
Helix 19
AC1
A
585 590Right-handed 310
Helix 20
AC2
A
643 659Right-handed alpha
Helix 21
AC3
A
673 675Right-handed 310
Helix 22
AC4
A
676 695Right-handed alpha
Helix 23
AC5
A
720 724Right-handed 310
Helix 24
AC6
A
776 788Right-handed alpha
Helix 25
AC7
A
801 818Right-handed alpha
Helix 26
AC8
A
842 848Right-handed alpha
Helix 27
AC9
A
851 856Right-handed alpha
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There are 8 sheets in PDB entry 8VAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 633first strand
Strand 2
A
611 618anti-parallel
Strand 3
A
592 600anti-parallel
Strand 4
A
664 670parallel
Strand 5
A
702 709parallel
Strand 6
A
764 771anti-parallel
Strand 7
A
747 752anti-parallel
Strand 8
A
735 737anti-parallel
Strand 9
A
407 413anti-parallel
Strand 10
A
28 34anti-parallel
Strand 11
A
716 718anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
181 184anti-parallel
Strand 3
A
197 209anti-parallel
Strand 4
A
214 226anti-parallel
Strand 5
A
36 40anti-parallel
Strand 6
A
401 402anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
92 94anti-parallel
Strand 3
A
45 53anti-parallel
Strand 4
A
121 132anti-parallel
Strand 5
A
105 109anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 281first strand
Strand 2
A
267 270anti-parallel
Strand 3
A
345 347anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
328 330anti-parallel
Strand 3
A
339 341anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 299first strand
Strand 2
A
303 308anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
419 420anti-parallel
Strand 3
A
578 579anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 495first strand
Strand 2
A
452 456parallel
Strand 3
A
518 523parallel
Strand 4
A
544 549parallel
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