Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VAM entry

There are 7 chains in PDB entry 8VAM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 333
B	GLY -2	PRO 368
C	GLY -2	GLU 367
D	GLY -2	HIS 360
E	GLY -2	LEU 334
F	GLY -2	LEU 366
G	LEU 119	LEU 366

There are113 helices in PDB entry 8VAM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	16	Right-handed alpha
Helix 2	AA2	A	27	45	Right-handed alpha
Helix 3	AA3	A	60	63	Right-handed 310
Helix 4	AA4	A	64	71	Right-handed alpha
Helix 5	AA5	A	90	101	Right-handed alpha
Helix 6	AA6	A	118	123	Right-handed alpha
Helix 7	AA7	A	124	130	Right-handed alpha
Helix 8	AA8	A	146	158	Right-handed alpha
Helix 9	AA9	A	163	174	Right-handed alpha
Helix 10	AB1	A	177	192	Right-handed alpha
Helix 11	AB2	A	198	205	Right-handed alpha
Helix 12	AB3	A	214	224	Right-handed alpha
Helix 13	AB4	A	225	239	Right-handed alpha
Helix 14	AB5	A	242	262	Right-handed alpha
Helix 15	AB6	A	268	276	Right-handed alpha
Helix 16	AB7	A	279	293	Right-handed alpha
Helix 17	AB8	A	294	314	Right-handed alpha
Helix 18	AB9	A	319	332	Right-handed alpha
Helix 19	AC1	B	5	10	Right-handed alpha
Helix 20	AC2	B	14	18	Right-handed 310
Helix 21	AC3	B	21	35	Right-handed alpha
Helix 22	AC4	B	50	63	Right-handed alpha
Helix 23	AC5	B	76	85	Right-handed alpha
Helix 24	AC6	B	100	111	Right-handed alpha
Helix 25	AC7	B	128	131	Right-handed 310
Helix 26	AC8	B	132	145	Right-handed alpha
Helix 27	AC9	B	158	162	Right-handed 310
Helix 28	AD1	B	163	170	Right-handed alpha
Helix 29	AD2	B	179	194	Right-handed alpha
Helix 30	AD3	B	199	211	Right-handed alpha
Helix 31	AD4	B	213	228	Right-handed alpha
Helix 32	AD5	B	233	242	Right-handed alpha
Helix 33	AD6	B	249	259	Right-handed alpha
Helix 34	AD7	B	260	274	Right-handed alpha
Helix 35	AD8	B	277	296	Right-handed alpha
Helix 36	AD9	B	297	302	Right-handed 310
Helix 37	AE1	B	303	307	Right-handed 310
Helix 38	AE2	B	309	319	Right-handed alpha
Helix 39	AE3	B	321	339	Right-handed alpha
Helix 40	AE4	B	344	359	Right-handed alpha
Helix 41	AE5	C	5	10	Right-handed alpha
Helix 42	AE6	C	21	35	Right-handed alpha
Helix 43	AE7	C	50	63	Right-handed alpha
Helix 44	AE8	C	76	84	Right-handed alpha
Helix 45	AE9	C	96	99	Right-handed 310
Helix 46	AF1	C	100	110	Right-handed alpha
Helix 47	AF2	C	128	131	Right-handed 310
Helix 48	AF3	C	132	145	Right-handed alpha
Helix 49	AF4	C	163	169	Right-handed alpha
Helix 50	AF5	C	179	194	Right-handed alpha
Helix 51	AF6	C	199	210	Right-handed alpha
Helix 52	AF7	C	213	228	Right-handed alpha
Helix 53	AF8	C	233	242	Right-handed alpha
Helix 54	AF9	C	245	259	Right-handed alpha
Helix 55	AG1	C	260	274	Right-handed alpha
Helix 56	AG2	C	277	295	Right-handed alpha
Helix 57	AG3	C	296	297	Right-handed 310
Helix 58	AG4	C	298	302	Right-handed 310
Helix 59	AG5	C	304	308	Right-handed 310
Helix 60	AG6	C	309	320	Right-handed alpha
Helix 61	AG7	C	321	339	Right-handed alpha
Helix 62	AG8	C	340	342	Right-handed 310
Helix 63	AG9	C	344	359	Right-handed alpha
Helix 64	AH1	D	5	10	Right-handed alpha
Helix 65	AH2	D	21	35	Right-handed alpha
Helix 66	AH3	D	50	63	Right-handed alpha
Helix 67	AH4	D	76	85	Right-handed alpha
Helix 68	AH5	D	100	111	Right-handed alpha
Helix 69	AH6	D	128	131	Right-handed 310
Helix 70	AH7	D	132	145	Right-handed alpha
Helix 71	AH8	D	158	162	Right-handed 310
Helix 72	AH9	D	163	170	Right-handed alpha
Helix 73	AI1	D	179	194	Right-handed alpha
Helix 74	AI2	D	199	210	Right-handed alpha
Helix 75	AI3	D	213	227	Right-handed alpha
Helix 76	AI4	D	233	242	Right-handed alpha
Helix 77	AI5	D	245	258	Right-handed alpha
Helix 78	AI6	D	260	275	Right-handed alpha
Helix 79	AI7	D	277	298	Right-handed alpha
Helix 80	AI8	D	309	320	Right-handed alpha
Helix 81	AI9	D	321	338	Right-handed alpha
Helix 82	AJ1	D	344	357	Right-handed alpha
Helix 83	AJ2	E	4	6	Right-handed 310
Helix 84	AJ3	E	7	20	Right-handed alpha
Helix 85	AJ4	E	36	50	Right-handed alpha
Helix 86	AJ5	E	65	70	Right-handed alpha
Helix 87	AJ6	E	89	101	Right-handed alpha
Helix 88	AJ7	E	121	134	Right-handed alpha
Helix 89	AJ8	E	154	159	Right-handed alpha
Helix 90	AJ9	E	168	180	Right-handed alpha
Helix 91	AK1	E	183	194	Right-handed alpha
Helix 92	AK2	E	197	207	Right-handed alpha
Helix 93	AK3	E	208	227	Right-handed alpha
Helix 94	AK4	E	229	237	Right-handed 310
Helix 95	AK5	E	240	260	Right-handed alpha
Helix 96	AK6	E	270	281	Right-handed alpha
Helix 97	AK7	E	282	303	Right-handed alpha
Helix 98	AK8	E	307	324	Right-handed alpha
Helix 99	AK9	F	7	18	Right-handed alpha
Helix 100	AL1	F	72	82	Right-handed alpha
Helix 101	AL2	F	131	143	Right-handed alpha
Helix 102	AL3	F	152	156	Right-handed 310
Helix 103	AL4	F	196	208	Right-handed alpha
Helix 104	AL5	F	243	248	Right-handed alpha
Helix 105	AL6	F	260	273	Right-handed alpha
Helix 106	AL7	F	320	331	Right-handed alpha
Helix 107	AL8	G	131	143	Right-handed alpha
Helix 108	AL9	G	144	146	Right-handed 310
Helix 109	AM1	G	152	155	Right-handed 310
Helix 110	AM2	G	197	207	Right-handed alpha
Helix 111	AM3	G	260	271	Right-handed alpha
Helix 112	AM4	G	272	274	Right-handed 310
Helix 113	AM5	G	321	332	Right-handed alpha

There are 14 sheets in PDB entry 8VAM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	134	138	parallel
Strand 3	A	20	24	parallel
Strand 4	A	108	114	parallel
Strand 5	A	77	83	parallel
Strand 6	A	47	54	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	196	197	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	94	first strand
Strand 2	B	121	126	parallel
Strand 3	B	150	156	parallel
Strand 4	B	40	44	parallel
Strand 5	B	171	174	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	94	first strand
Strand 2	C	121	126	parallel
Strand 3	C	150	155	parallel
Strand 4	C	40	45	parallel
Strand 5	C	173	175	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	94	first strand
Strand 2	D	121	126	parallel
Strand 3	D	150	156	parallel
Strand 4	D	40	44	parallel
Strand 5	D	171	174	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	30	first strand
Strand 2	E	143	145	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	79	first strand
Strand 2	E	110	114	parallel
Strand 3	E	139	140	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	5	first strand
Strand 2	F	88	93	anti-parallel
Strand 3	F	96	101	anti-parallel
Strand 4	F	104	109	anti-parallel
Strand 5	G	301	306	anti-parallel
Strand 6	G	290	295	anti-parallel
Strand 7	G	280	285	anti-parallel
Strand 8	G	315	320	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	71	first strand
Strand 2	F	32	38	anti-parallel
Strand 3	F	41	47	anti-parallel
Strand 4	F	51	58	anti-parallel
Strand 5	F	230	235	anti-parallel
Strand 6	F	222	227	anti-parallel
Strand 7	F	215	218	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	188	195	first strand
Strand 2	F	158	164	anti-parallel
Strand 3	F	166	173	anti-parallel
Strand 4	F	176	182	anti-parallel
Strand 5	F	357	361	anti-parallel
Strand 6	F	347	351	anti-parallel
Strand 7	F	336	340	anti-parallel
Strand 8	F	254	256	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	301	306	first strand
Strand 2	F	289	295	anti-parallel
Strand 3	F	281	286	anti-parallel
Strand 4	F	315	319	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	128	first strand
Strand 2	G	215	218	anti-parallel
Strand 3	G	222	227	anti-parallel
Strand 4	G	230	231	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	128	first strand
Strand 2	G	215	218	anti-parallel
Strand 3	G	222	227	anti-parallel
Strand 4	G	234	235	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	194	196	first strand
Strand 2	G	157	172	anti-parallel
Strand 3	G	177	191	anti-parallel
Strand 4	G	357	361	anti-parallel
Strand 5	G	347	351	anti-parallel
Strand 6	G	335	340	anti-parallel
Strand 7	G	254	259	anti-parallel
Strand 8	G	309	310	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VAM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAM