Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VAN entry

There are 7 chains in PDB entry 8VAN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 343
B	MET 1	HIS 360
C	GLN 4	PRO 368
D	SER 2	HIS 360
E	MET 1	LEU 334
F	MET 1	LEU 366
G	MET 1	LEU 366

There are112 helices in PDB entry 8VAN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	7	Right-handed 310
Helix 2	AA2	A	8	16	Right-handed alpha
Helix 3	AA3	A	27	45	Right-handed alpha
Helix 4	AA4	A	92	102	Right-handed alpha
Helix 5	AA5	A	118	124	Right-handed alpha
Helix 6	AA6	A	146	158	Right-handed alpha
Helix 7	AA7	A	163	174	Right-handed alpha
Helix 8	AA8	A	177	192	Right-handed alpha
Helix 9	AA9	A	198	205	Right-handed alpha
Helix 10	AB1	A	214	224	Right-handed alpha
Helix 11	AB2	A	227	239	Right-handed alpha
Helix 12	AB3	A	242	263	Right-handed alpha
Helix 13	AB4	A	271	276	Right-handed alpha
Helix 14	AB5	A	279	293	Right-handed alpha
Helix 15	AB6	A	294	314	Right-handed alpha
Helix 16	AB7	A	319	332	Right-handed alpha
Helix 17	AB8	B	21	34	Right-handed alpha
Helix 18	AB9	B	52	63	Right-handed alpha
Helix 19	AC1	B	76	84	Right-handed alpha
Helix 20	AC2	B	101	110	Right-handed alpha
Helix 21	AC3	B	134	140	Right-handed alpha
Helix 22	AC4	B	140	145	Right-handed alpha
Helix 23	AC5	B	158	162	Right-handed 310
Helix 24	AC6	B	163	169	Right-handed alpha
Helix 25	AC7	B	179	194	Right-handed alpha
Helix 26	AC8	B	199	210	Right-handed alpha
Helix 27	AC9	B	213	227	Right-handed alpha
Helix 28	AD1	B	233	244	Right-handed alpha
Helix 29	AD2	B	248	258	Right-handed alpha
Helix 30	AD3	B	262	274	Right-handed alpha
Helix 31	AD4	B	277	296	Right-handed alpha
Helix 32	AD5	B	298	302	Right-handed 310
Helix 33	AD6	B	303	308	Right-handed 310
Helix 34	AD7	B	309	319	Right-handed alpha
Helix 35	AD8	B	321	342	Right-handed alpha
Helix 36	AD9	B	344	355	Right-handed alpha
Helix 37	AE1	B	356	360	Right-handed 310
Helix 38	AE2	C	5	10	Right-handed alpha
Helix 39	AE3	C	14	18	Right-handed 310
Helix 40	AE4	C	21	34	Right-handed alpha
Helix 41	AE5	C	50	63	Right-handed alpha
Helix 42	AE6	C	77	84	Right-handed alpha
Helix 43	AE7	C	100	113	Right-handed alpha
Helix 44	AE8	C	132	145	Right-handed alpha
Helix 45	AE9	C	158	162	Right-handed 310
Helix 46	AF1	C	163	170	Right-handed alpha
Helix 47	AF2	C	179	194	Right-handed alpha
Helix 48	AF3	C	199	210	Right-handed alpha
Helix 49	AF4	C	213	228	Right-handed alpha
Helix 50	AF5	C	233	241	Right-handed alpha
Helix 51	AF6	C	245	258	Right-handed alpha
Helix 52	AF7	C	262	274	Right-handed alpha
Helix 53	AF8	C	278	298	Right-handed alpha
Helix 54	AF9	C	309	320	Right-handed alpha
Helix 55	AG1	C	321	339	Right-handed alpha
Helix 56	AG2	C	340	342	Right-handed 310
Helix 57	AG3	C	344	359	Right-handed alpha
Helix 58	AG4	D	7	11	Right-handed 310
Helix 59	AG5	D	21	34	Right-handed alpha
Helix 60	AG6	D	52	63	Right-handed alpha
Helix 61	AG7	D	76	83	Right-handed alpha
Helix 62	AG8	D	100	110	Right-handed alpha
Helix 63	AG9	D	111	113	Right-handed 310
Helix 64	AH1	D	127	131	Right-handed 310
Helix 65	AH2	D	132	145	Right-handed alpha
Helix 66	AH3	D	163	169	Right-handed alpha
Helix 67	AH4	D	179	194	Right-handed alpha
Helix 68	AH5	D	199	210	Right-handed alpha
Helix 69	AH6	D	213	227	Right-handed alpha
Helix 70	AH7	D	234	242	Right-handed alpha
Helix 71	AH8	D	247	258	Right-handed alpha
Helix 72	AH9	D	261	272	Right-handed alpha
Helix 73	AI1	D	277	298	Right-handed alpha
Helix 74	AI2	D	309	320	Right-handed alpha
Helix 75	AI3	D	322	338	Right-handed alpha
Helix 76	AI4	D	344	360	Right-handed alpha
Helix 77	AI5	E	4	6	Right-handed 310
Helix 78	AI6	E	7	20	Right-handed alpha
Helix 79	AI7	E	36	49	Right-handed alpha
Helix 80	AI8	E	62	68	Right-handed alpha
Helix 81	AI9	E	89	99	Right-handed alpha
Helix 82	AJ1	E	100	103	Right-handed 310
Helix 83	AJ2	E	116	120	Right-handed 310
Helix 84	AJ3	E	121	134	Right-handed alpha
Helix 85	AJ4	E	147	151	Right-handed 310
Helix 86	AJ5	E	152	159	Right-handed alpha
Helix 87	AJ6	E	168	179	Right-handed alpha
Helix 88	AJ7	E	183	194	Right-handed alpha
Helix 89	AJ8	E	199	204	Right-handed alpha
Helix 90	AJ9	E	208	227	Right-handed alpha
Helix 91	AK1	E	229	231	Right-handed 310
Helix 92	AK2	E	232	237	Right-handed alpha
Helix 93	AK3	E	240	259	Right-handed alpha
Helix 94	AK4	E	271	281	Right-handed alpha
Helix 95	AK5	E	282	303	Right-handed alpha
Helix 96	AK6	E	307	324	Right-handed alpha
Helix 97	AK7	F	10	17	Right-handed alpha
Helix 98	AK8	F	18	22	Right-handed 310
Helix 99	AK9	F	72	82	Right-handed alpha
Helix 100	AL1	F	132	141	Right-handed alpha
Helix 101	AL2	F	142	146	Right-handed 310
Helix 102	AL3	F	197	206	Right-handed alpha
Helix 103	AL4	F	243	248	Right-handed alpha
Helix 104	AL5	F	260	272	Right-handed alpha
Helix 105	AL6	F	321	331	Right-handed alpha
Helix 106	AL7	G	10	19	Right-handed alpha
Helix 107	AL8	G	72	82	Right-handed alpha
Helix 108	AL9	G	131	143	Right-handed alpha
Helix 109	AM1	G	197	206	Right-handed alpha
Helix 110	AM2	G	260	271	Right-handed alpha
Helix 111	AM3	G	272	274	Right-handed 310
Helix 112	AM4	G	321	331	Right-handed alpha

There are 18 sheets in PDB entry 8VAN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	135	139	parallel
Strand 3	A	21	25	parallel
Strand 4	A	109	114	parallel
Strand 5	A	78	83	parallel
Strand 6	A	49	52	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	171	172	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	121	125	parallel
Strand 3	B	150	154	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	93	first strand
Strand 2	C	121	125	parallel
Strand 3	C	150	155	parallel
Strand 4	C	40	44	parallel
Strand 5	C	171	174	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	94	first strand
Strand 2	D	122	126	parallel
Strand 3	D	152	156	parallel
Strand 4	D	40	44	parallel
Strand 5	D	171	174	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	113	first strand
Strand 2	E	139	144	parallel
Strand 3	E	28	29	parallel
Strand 4	E	161	162	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	6	first strand
Strand 2	F	87	93	anti-parallel
Strand 3	F	96	100	anti-parallel
Strand 4	F	105	109	anti-parallel
Strand 5	G	301	307	anti-parallel
Strand 6	G	289	295	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	58	first strand
Strand 2	F	41	47	anti-parallel
Strand 3	F	32	38	anti-parallel
Strand 4	F	66	71	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	130	first strand
Strand 2	F	214	218	anti-parallel
Strand 3	F	222	227	anti-parallel
Strand 4	F	230	235	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	159	first strand
Strand 2	F	193	196	anti-parallel
Strand 3	F	237	238	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	163	first strand
Strand 2	F	166	172	anti-parallel
Strand 3	F	176	183	anti-parallel
Strand 4	F	357	361	anti-parallel
Strand 5	F	347	350	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	309	311	first strand
Strand 2	F	255	259	anti-parallel
Strand 3	F	335	338	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	316	320	first strand
Strand 2	F	280	284	anti-parallel
Strand 3	F	289	296	anti-parallel
Strand 4	F	300	307	anti-parallel
Strand 5	G	104	109	anti-parallel
Strand 6	G	96	101	anti-parallel
Strand 7	G	87	93	anti-parallel
Strand 8	G	5	6	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	35	first strand
Strand 2	G	68	71	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	52	55	anti-parallel
Strand 3	G	230	232	anti-parallel
Strand 4	G	224	227	anti-parallel
Strand 5	G	214	217	anti-parallel
Strand 6	G	128	130	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	182	first strand
Strand 2	G	167	172	anti-parallel
Strand 3	G	158	161	anti-parallel
Strand 4	G	194	195	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	182	first strand
Strand 2	G	167	172	anti-parallel
Strand 3	G	176	179	anti-parallel
Strand 4	G	358	361	anti-parallel
Strand 5	G	347	351	anti-parallel
Strand 6	G	335	340	anti-parallel
Strand 7	G	254	259	anti-parallel
Strand 8	G	309	311	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	280	283	first strand
Strand 2	G	317	320	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VAN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAN