Analysis of interatomic Contacts of Structural Units in PDB entry:
8VAO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VAO entry

There are 3 chains in PDB entry 8VAO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 704PRO 1140
B
 CYS 704PRO 1140
C
 CYS 704PRO 1140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 8VAO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
737 742Right-handed alpha
Helix 2
AA2
A
747 754Right-handed alpha
Helix 3
AA3
A
755 757Right-handed 310
Helix 4
AA4
A
758 783Right-handed alpha
Helix 5
AA5
A
801 805Right-handed 310
Helix 6
AA6
A
816 826Right-handed alpha
Helix 7
AA7
A
832 842Right-handed alpha
Helix 8
AA8
A
847 855Right-handed alpha
Helix 9
AA9
A
866 885Right-handed alpha
Helix 10
AB1
A
886 890Right-handed 310
Helix 11
AB2
A
897 908Right-handed alpha
Helix 12
AB3
A
912 919Right-handed alpha
Helix 13
AB4
A
919 941Right-handed alpha
Helix 14
AB5
A
945 965Right-handed alpha
Helix 15
AB6
A
966 968Right-handed 310
Helix 16
AB7
A
976 984Right-handed alpha
Helix 17
AB8
A
985 1033Right-handed alpha
Helix 18
AB9
A
1116 1118Right-handed 310
Helix 19
AC1
B
737 742Right-handed alpha
Helix 20
AC2
B
747 754Right-handed alpha
Helix 21
AC3
B
755 757Right-handed 310
Helix 22
AC4
B
758 783Right-handed alpha
Helix 23
AC5
B
801 805Right-handed 310
Helix 24
AC6
B
816 826Right-handed alpha
Helix 25
AC7
B
832 842Right-handed alpha
Helix 26
AC8
B
847 855Right-handed alpha
Helix 27
AC9
B
866 885Right-handed alpha
Helix 28
AD1
B
886 890Right-handed 310
Helix 29
AD2
B
897 908Right-handed alpha
Helix 30
AD3
B
912 919Right-handed alpha
Helix 31
AD4
B
919 941Right-handed alpha
Helix 32
AD5
B
945 965Right-handed alpha
Helix 33
AD6
B
966 968Right-handed 310
Helix 34
AD7
B
976 984Right-handed alpha
Helix 35
AD8
B
985 1033Right-handed alpha
Helix 36
AD9
B
1116 1118Right-handed 310
Helix 37
AE1
C
737 742Right-handed alpha
Helix 38
AE2
C
747 754Right-handed alpha
Helix 39
AE3
C
755 757Right-handed 310
Helix 40
AE4
C
758 783Right-handed alpha
Helix 41
AE5
C
801 805Right-handed 310
Helix 42
AE6
C
816 826Right-handed alpha
Helix 43
AE7
C
832 842Right-handed alpha
Helix 44
AE8
C
847 855Right-handed alpha
Helix 45
AE9
C
866 885Right-handed alpha
Helix 46
AF1
C
886 890Right-handed 310
Helix 47
AF2
C
897 908Right-handed alpha
Helix 48
AF3
C
912 919Right-handed alpha
Helix 49
AF4
C
919 941Right-handed alpha
Helix 50
AF5
C
945 965Right-handed alpha
Helix 51
AF6
C
966 968Right-handed 310
Helix 52
AF7
C
976 984Right-handed alpha
Helix 53
AF8
C
985 1033Right-handed alpha
Helix 54
AF9
C
1116 1118Right-handed 310
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There are 12 sheets in PDB entry 8VAO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 728first strand
Strand 2
A
1059 1076anti-parallel
Strand 3
A
1047 1056anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 736first strand
Strand 2
A
858 860anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1122first strand
Strand 2
A
1086 1090anti-parallel
Strand 3
A
1081 1083anti-parallel
Strand 4
A
1133 1134parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1094 1098first strand
Strand 2
A
1101 1105anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
711 728first strand
Strand 2
B
1059 1076anti-parallel
Strand 3
B
1047 1056anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
734 736first strand
Strand 2
B
858 860anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1120 1122first strand
Strand 2
B
1086 1090anti-parallel
Strand 3
B
1081 1083anti-parallel
Strand 4
B
1133 1134parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1094 1098first strand
Strand 2
B
1101 1105anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
711 728first strand
Strand 2
C
1059 1076anti-parallel
Strand 3
C
1047 1056anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
734 736first strand
Strand 2
C
858 860anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1120 1122first strand
Strand 2
C
1086 1090anti-parallel
Strand 3
C
1081 1083anti-parallel
Strand 4
C
1133 1134parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1094 1098first strand
Strand 2
C
1101 1105anti-parallel
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